PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Garb09G0005220 Flavonoid F3H medium borderline
Garb09G0005600 Flavonoid F3H low borderline
Garb09G0006400 Flavonoid F3H medium borderline
Garb09G0014110 Flavonoid F3H medium borderline
Garb09G0017020 Flavonoid F3H low borderline
Garb09G0018720 Flavonoid F3H medium pass
Garb09G0022240 Flavonoid F3H medium borderline
Garb09G0023010 Flavonoid F3H low borderline
Garb09G0025690 Flavonoid F3H low borderline
Garb09G0025700 Flavonoid F3H low borderline
Garb09G0025710 Flavonoid F3H low borderline
Garb09G0025720 Flavonoid F3H low borderline
Garb10G0008200 Flavonoid F3H medium borderline
Garb10G0008800 Flavonoid F3H medium borderline
Garb10G0011450 Flavonoid F3H medium borderline
Garb10G0018550 Flavonoid F3H low borderline
Garb10G0020550 Flavonoid F3H medium borderline
Garb10G0024300 Flavonoid F3H medium borderline
Garb10G0025090 Flavonoid F3H low borderline
Garb10G0025800 Flavonoid F3H medium borderline
Garb10G0025810 Flavonoid F3H low borderline
Garb10G0027140 Flavonoid F3H medium borderline
Garb10G0037800 Flavonoid F3H low borderline
Garb10G0037820 Flavonoid F3H low borderline
Garb10G0037830 Flavonoid F3H low borderline
Garb10G0037850 Flavonoid F3H low borderline
Garb10G0037890 Flavonoid F3H low borderline
Garb10G0037900 Flavonoid F3H low borderline
Garb10G0037920 Flavonoid F3H low borderline
Garb11G0000480 Flavonoid F3H medium borderline
Garb11G0000620 Flavonoid F3H low borderline
Garb11G0000640 Flavonoid F3H low borderline
Garb11G0000650 Flavonoid F3H low borderline
Garb11G0005170 Flavonoid F3H medium borderline
Garb11G0010230 Flavonoid F3H medium borderline
Garb11G0012860 Flavonoid F3H medium borderline
Garb11G0012870 Flavonoid F3H medium borderline
Garb11G0012880 Flavonoid F3H medium borderline
Garb11G0012890 Flavonoid F3H medium borderline
Garb11G0012900 Flavonoid F3H medium borderline
Garb11G0013960 Flavonoid F3H medium borderline
Garb11G0022720 Flavonoid F3H medium borderline
Garb11G0022740 Flavonoid F3H medium borderline
Garb11G0022760 Flavonoid F3H medium borderline
Garb11G0022790 Flavonoid F3H medium borderline
Garb11G0027580 Flavonoid F3H medium borderline
Garb11G0030230 Flavonoid F3H low borderline
Garb11G0031140 Flavonoid F3H medium borderline
Garb11G0031160 Flavonoid F3H medium borderline
Garb11G0033390 Flavonoid F3H medium pass