PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Garb12G0002100 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Garb12G0002150 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb12G0002700 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb12G0006250 Phenylpropanoid POD low borderline POD__00012__sp_Q10N21_APX1_ORYSJ
Garb12G0015010 Phenylpropanoid POD medium pass POD__00007__sp_P0C5C9_REHYA_ORYSJ
Garb12G0015570 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb12G0015590 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb12G0016930 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Garb12G0020010 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Garb12G0021810 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Garb12G0022760 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Garb12G0023210 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Garb12G0024410 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Garb12G0024420 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Garb12G0029610 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb12G0031580 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb12G0032200 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb12G0032210 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb13G0003940 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Garb13G0004030 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Garb13G0004040 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Garb13G0004050 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Garb13G0007490 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Garb13G0011820 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb13G0015380 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Garb13G0018920 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb13G0021470 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Garb13G0022180 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Garb13G0022650 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Garb13G0024270 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH