PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Garb10G0006410 Terpenoid TPS medium pass TPS__00134__sp_J9R388_TPS10_SELML
Garb10G0014910 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0014940 Terpenoid TPS low borderline TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0014950 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Garb10G0016160 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0016200 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb10G0016210 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0016220 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0016240 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0016250 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb10G0024020 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Garb10G0024030 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Garb10G0024050 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Garb10G0024540 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
Garb10G0024550 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
Garb10G0024590 Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
Garb10G0026730 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Garb10G0038250 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb10G0038260 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb10G0039650 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb10G0039670 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb11G0007150 Terpenoid TPS medium pass TPS__00141__sp_M4HXU6_TPSD1_PINBN
Garb11G0031920 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb11G0031930 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb11G0033890 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb12G0023220 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb12G0023230 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Garb13G0002150 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Garb13G0002160 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Garb13G0027880 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb13G0027900 Terpenoid TPS low borderline TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb13G0028230 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb13G0031290 Terpenoid TPS medium pass TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Garb13G0031300 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb13G0031310 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Garb13G0031320 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO