PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.94% Alkaloid pathway 22.7% Phenylpropanoid pathway 21.82% Flavonoid pathway 11.64% Rosmarinic acid pathway 7.78% Steroid pathway 6.12%
Family Distribution
C4H 7.23% C3'H/CYP98A 6.0% BAHD 4.87% IFS 3.92% CYP76 3.81% UGT 3.66% T3O 3.56% F3H 3.48%
Other Families 63.47%
More Families (98)
POD 180 3.46% 4CL 174 3.35% 7DLGT 171 3.29% UFGT 162 3.12% BR6OX2/CYP85A2 107 2.06% CODM/T6ODM 101 1.94% DWF4/CYP90B1 101 1.94% NMT 100 1.92% F3'H/CYP75B 98 1.89% STR 92 1.77% TPS 86 1.65% H6H 85 1.64% CAD 81 1.56% CYP90D1 74 1.42% CYP71 74 1.42% GES 73 1.4% LAC 72 1.39% TRI/TRII 65 1.25% CAS 65 1.25% 7DLH 54 1.04% CSE 51 0.98% SMT1/SMT2/SMT3 51 0.98% GS 49 0.94% BBE 48 0.92% HCT 48 0.92% COMT 48 0.92% G8O/G8H 42 0.81% PYKS 39 0.75% RAS 39 0.75% IO 36 0.69% F3'5'H/CYP75A 35 0.67% F5H/CYP84A 35 0.67% T16H 34 0.65% FNS 34 0.65% IFR 34 0.65% NCS 33 0.63% 16OMT 32 0.62% CCR 29 0.56% SGD 27 0.52% SLS 25 0.48% ANR 24 0.46% CYP51G1 24 0.46% TAT 23 0.44% BR6OX1/CYP85A1 23 0.44% PMT 22 0.42% COR 22 0.42% PAL 21 0.4% CPD/CYP90A1 20 0.38% ROT3/CYP90C1 19 0.37% 8HGO 18 0.35% DFR 17 0.33% SQE 15 0.29% TYDC_DDC 13 0.25% ANS/LDOX 13 0.25% GGPPS 13 0.25% CYP719 12 0.23% CHS 12 0.23% CNMT 11 0.21% LAMT 11 0.21% HMGR 11 0.21% CYP80B1 10 0.19% SQS/FDFT1 9 0.17% SMO1/SMO2 9 0.17% HMGS 9 0.17% FPPS 9 0.17% MPO 8 0.15% ISY 8 0.15% CCoAOMT 8 0.15% CPR 7 0.13% AACT 7 0.13% DXS 7 0.13% TDC 6 0.12% HPPR 6 0.12% DET2 6 0.12% XMT_MXMT_DXMT 5 0.1% MVK 5 0.1% MVD 5 0.1% 6OMT_4OMT_SOMT 4 0.08% ADC 4 0.08% CHI 4 0.08% ODC 3 0.06% FLS 3 0.06% DWF1 3 0.06% MCT/IspD 3 0.06% HDR/IspH 3 0.06% DXR 3 0.06% CYP80F1 2 0.04% DWF5 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% GPPS 2 0.04% DWF7 1 0.02% CPI1 1 0.02% FK 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Garb11G0030980 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Garb12G0000750 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Garb12G0000760 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Garb12G0023950 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Garb12G0029780 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Garb13G0000820 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Garb13G0001250 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Garb13G0007220 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Garb13G0007230 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Garb13G0007240 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Garb13G0012140 Alkaloid TRI/TRII low borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Garb13G0017640 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Garb13G0031570 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Garb13G0031580 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Garb13G0031590 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB