PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Garb01G0026360 Alkaloid 7DLGT low borderline
Garb01G0026370 Alkaloid 7DLGT low borderline
Garb01G0030270 Alkaloid 7DLGT medium pass
Garb01G0030290 Alkaloid 7DLGT low borderline
Garb01G0033070 Alkaloid 7DLGT low borderline
Garb02G0000150 Alkaloid 7DLGT low borderline
Garb02G0000200 Alkaloid 7DLGT medium pass
Garb02G0000220 Alkaloid 7DLGT medium pass
Garb02G0000230 Alkaloid 7DLGT medium pass
Garb02G0000250 Alkaloid 7DLGT high pass
Garb02G0000260 Alkaloid 7DLGT medium pass
Garb02G0000270 Alkaloid 7DLGT medium pass
Garb02G0000930 Alkaloid 7DLGT medium pass
Garb02G0003390 Alkaloid 7DLGT low borderline
Garb02G0015020 Alkaloid 7DLGT medium pass
Garb02G0015830 Alkaloid 7DLGT low borderline
Garb03G0011040 Alkaloid 7DLGT medium pass
Garb03G0023710 Alkaloid 7DLGT low borderline
Garb04G0001070 Alkaloid 7DLGT medium pass
Garb04G0001080 Alkaloid 7DLGT medium pass
Garb04G0001090 Alkaloid 7DLGT low borderline
Garb04G0001100 Alkaloid 7DLGT medium pass
Garb04G0001110 Alkaloid 7DLGT low borderline
Garb04G0009200 Alkaloid 7DLGT low borderline
Garb04G0009210 Alkaloid 7DLGT low borderline
Garb04G0009220 Alkaloid 7DLGT medium pass
Garb04G0009630 Alkaloid 7DLGT high pass
Garb04G0012280 Alkaloid 7DLGT low borderline
Garb04G0012290 Alkaloid 7DLGT low borderline
Garb04G0012300 Alkaloid 7DLGT low borderline
Garb04G0015700 Alkaloid 7DLGT medium pass
Garb04G0015710 Alkaloid 7DLGT low borderline
Garb04G0023160 Alkaloid 7DLGT low borderline
Garb04G0031880 Alkaloid 7DLGT low borderline
Garb05G0007520 Alkaloid 7DLGT low borderline
Garb05G0008310 Alkaloid 7DLGT medium pass
Garb05G0014560 Alkaloid 7DLGT medium pass
Garb05G0014570 Alkaloid 7DLGT medium pass
Garb05G0015430 Alkaloid 7DLGT low borderline
Garb05G0015440 Alkaloid 7DLGT low borderline
Garb05G0015450 Alkaloid 7DLGT low borderline
Garb05G0017290 Alkaloid 7DLGT medium pass
Garb05G0017960 Alkaloid 7DLGT medium pass
Garb06G0003670 Alkaloid 7DLGT medium pass
Garb06G0003680 Alkaloid 7DLGT low borderline
Garb06G0004120 Alkaloid 7DLGT low borderline
Garb06G0004150 Alkaloid 7DLGT low borderline
Garb06G0004750 Alkaloid 7DLGT medium pass
Garb06G0004760 Alkaloid 7DLGT medium pass
Garb06G0009820 Alkaloid 7DLGT medium pass