PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Garb11G0003480 Rosmarinic Acid 4CL low borderline
Garb11G0004190 Rosmarinic Acid 4CL medium pass
Garb11G0010760 Rosmarinic Acid 4CL medium pass
Garb11G0029440 Rosmarinic Acid 4CL low borderline
Garb12G0019210 Rosmarinic Acid 4CL medium pass
Garb12G0020330 Rosmarinic Acid 4CL low borderline
Garb12G0020790 Rosmarinic Acid 4CL medium pass
Garb13G0020760 Rosmarinic Acid 4CL medium pass
Garb01G0003290 Rosmarinic Acid C4H low borderline
Garb01G0003300 Rosmarinic Acid C4H low borderline
Garb01G0004460 Rosmarinic Acid C4H low borderline
Garb01G0007000 Rosmarinic Acid C4H low borderline
Garb01G0008160 Rosmarinic Acid C4H low borderline
Garb01G0011350 Rosmarinic Acid C4H low borderline
Garb01G0013420 Rosmarinic Acid C4H medium pass
Garb01G0013440 Rosmarinic Acid C4H low borderline
Garb01G0013450 Rosmarinic Acid C4H medium pass
Garb01G0013460 Rosmarinic Acid C4H low borderline
Garb01G0014320 Rosmarinic Acid C4H low borderline
Garb01G0015850 Rosmarinic Acid C4H low borderline
Garb01G0015860 Rosmarinic Acid C4H low borderline
Garb01G0015890 Rosmarinic Acid C4H low borderline
Garb01G0017310 Rosmarinic Acid C4H low borderline
Garb01G0017320 Rosmarinic Acid C4H low borderline
Garb01G0017770 Rosmarinic Acid C4H low borderline
Garb01G0018960 Rosmarinic Acid C4H low borderline
Garb01G0019770 Rosmarinic Acid C4H low borderline
Garb01G0022290 Rosmarinic Acid C4H medium pass
Garb01G0022300 Rosmarinic Acid C4H low borderline
Garb01G0022310 Rosmarinic Acid C4H low borderline
Garb01G0022320 Rosmarinic Acid C4H low borderline
Garb01G0025450 Rosmarinic Acid C4H medium pass
Garb01G0025470 Rosmarinic Acid C4H medium pass
Garb01G0027830 Rosmarinic Acid C4H low borderline
Garb01G0028320 Rosmarinic Acid C4H low borderline
Garb01G0029030 Rosmarinic Acid C4H low borderline
Garb01G0031050 Rosmarinic Acid C4H low borderline
Garb01G0031060 Rosmarinic Acid C4H medium pass
Garb01G0032580 Rosmarinic Acid C4H low borderline
Garb01G0035020 Rosmarinic Acid C4H low borderline
Garb02G0001010 Rosmarinic Acid C4H low borderline
Garb02G0003460 Rosmarinic Acid C4H medium pass
Garb02G0003470 Rosmarinic Acid C4H low borderline
Garb02G0003480 Rosmarinic Acid C4H medium pass
Garb02G0003490 Rosmarinic Acid C4H low borderline
Garb02G0003770 Rosmarinic Acid C4H medium pass
Garb02G0007300 Rosmarinic Acid C4H low borderline
Garb02G0007790 Rosmarinic Acid C4H low borderline
Garb02G0009130 Rosmarinic Acid C4H low borderline
Garb02G0012100 Rosmarinic Acid C4H low borderline