PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Garb03G0004320 Alkaloid T3O medium borderline
Garb03G0018030 Alkaloid T3O low borderline
Garb03G0027810 Alkaloid T3O medium borderline
Garb04G0004970 Alkaloid T3O low borderline
Garb04G0007050 Alkaloid T3O medium borderline
Garb04G0012240 Alkaloid T3O medium borderline
Garb04G0013000 Alkaloid T3O medium pass
Garb04G0013640 Alkaloid T3O high pass
Garb04G0019720 Alkaloid T3O medium borderline
Garb04G0022370 Alkaloid T3O medium borderline
Garb04G0022500 Alkaloid T3O medium pass
Garb04G0025350 Alkaloid T3O medium borderline
Garb04G0030180 Alkaloid T3O medium borderline
Garb04G0030190 Alkaloid T3O medium borderline
Garb04G0030200 Alkaloid T3O medium borderline
Garb05G0000860 Alkaloid T3O medium pass
Garb05G0004590 Alkaloid T3O medium borderline
Garb05G0008500 Alkaloid T3O medium borderline
Garb05G0010130 Alkaloid T3O medium borderline
Garb05G0010170 Alkaloid T3O low borderline
Garb05G0016010 Alkaloid T3O medium pass
Garb06G0000220 Alkaloid T3O medium borderline
Garb06G0000230 Alkaloid T3O medium borderline
Garb06G0000240 Alkaloid T3O medium borderline
Garb06G0001330 Alkaloid T3O medium pass
Garb06G0002780 Alkaloid T3O medium borderline
Garb06G0007190 Alkaloid T3O low borderline
Garb06G0007980 Alkaloid T3O medium borderline
Garb06G0008480 Alkaloid T3O medium borderline
Garb06G0011710 Alkaloid T3O medium borderline
Garb06G0013720 Alkaloid T3O medium borderline
Garb06G0014420 Alkaloid T3O medium pass
Garb06G0016740 Alkaloid T3O medium borderline
Garb06G0017470 Alkaloid T3O low borderline
Garb06G0018400 Alkaloid T3O low borderline
Garb06G0018810 Alkaloid T3O medium borderline
Garb06G0020570 Alkaloid T3O medium borderline
Garb06G0021640 Alkaloid T3O medium borderline
Garb06G0022110 Alkaloid T3O medium borderline
Garb06G0026500 Alkaloid T3O medium borderline
Garb06G0029000 Alkaloid T3O low borderline
Garb06G0033130 Alkaloid T3O medium borderline
Garb07G0004100 Alkaloid T3O medium pass
Garb07G0006260 Alkaloid T3O medium borderline
Garb07G0006290 Alkaloid T3O medium borderline
Garb07G0006330 Alkaloid T3O medium borderline
Garb07G0006350 Alkaloid T3O medium borderline
Garb07G0006360 Alkaloid T3O medium borderline
Garb07G0006380 Alkaloid T3O medium borderline
Garb07G0006400 Alkaloid T3O medium borderline