PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Garb13G0014480 Alkaloid T3O medium borderline
Garb13G0016580 Alkaloid T3O medium borderline
Garb13G0016600 Alkaloid T3O medium borderline
Garb13G0016630 Alkaloid T3O medium borderline
Garb13G0017280 Alkaloid T3O medium pass
Garb13G0017840 Alkaloid T3O medium pass
Garb13G0019170 Alkaloid T3O medium borderline
Garb13G0025740 Alkaloid T3O medium pass
Garb13G0028800 Alkaloid T3O medium pass
Garb13G0029680 Alkaloid T3O medium borderline
Garb13G0033400 Alkaloid T3O medium borderline
Garb02G0003820 Alkaloid TDC low borderline
Garb07G0012500 Alkaloid TDC low borderline
Garb09G0011970 Alkaloid TDC medium borderline
Garb12G0004620 Alkaloid TDC low borderline
Garb13G0032610 Alkaloid TDC medium borderline
Garb13G0032620 Alkaloid TDC medium borderline
Garb01G0005450 Alkaloid TRI/TRII medium pass
Garb01G0022760 Alkaloid TRI/TRII medium pass
Garb01G0034270 Alkaloid TRI/TRII low borderline
Garb02G0011400 Alkaloid TRI/TRII medium pass
Garb02G0011410 Alkaloid TRI/TRII medium pass
Garb02G0011420 Alkaloid TRI/TRII medium pass
Garb02G0011450 Alkaloid TRI/TRII medium pass
Garb02G0011460 Alkaloid TRI/TRII medium pass
Garb02G0011480 Alkaloid TRI/TRII medium pass
Garb02G0014590 Alkaloid TRI/TRII medium pass
Garb02G0014600 Alkaloid TRI/TRII medium pass
Garb03G0002650 Alkaloid TRI/TRII low borderline
Garb04G0005270 Alkaloid TRI/TRII low borderline
Garb04G0005570 Alkaloid TRI/TRII medium pass
Garb04G0027040 Alkaloid TRI/TRII low borderline
Garb04G0027050 Alkaloid TRI/TRII medium pass
Garb04G0032420 Alkaloid TRI/TRII medium pass
Garb04G0034310 Alkaloid TRI/TRII medium pass
Garb05G0002340 Alkaloid TRI/TRII low borderline
Garb06G0006610 Alkaloid TRI/TRII medium pass
Garb06G0010740 Alkaloid TRI/TRII medium pass
Garb06G0026270 Alkaloid TRI/TRII low borderline
Garb07G0000910 Alkaloid TRI/TRII medium pass
Garb07G0010750 Alkaloid TRI/TRII low borderline
Garb07G0010770 Alkaloid TRI/TRII low borderline
Garb07G0033210 Alkaloid TRI/TRII medium pass
Garb08G0018080 Alkaloid TRI/TRII medium pass
Garb08G0018090 Alkaloid TRI/TRII medium pass
Garb08G0018100 Alkaloid TRI/TRII medium pass
Garb08G0018110 Alkaloid TRI/TRII low borderline
Garb08G0018140 Alkaloid TRI/TRII medium pass
Garb08G0018150 Alkaloid TRI/TRII medium pass
Garb08G0021330 Alkaloid TRI/TRII medium pass