PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA01G31770.1 Flavonoid C4H medium borderline
ONIVA01G31770.2 Flavonoid C4H medium borderline
ONIVA01G40290.1 Flavonoid C4H medium pass
ONIVA04G05480.1 Flavonoid C4H medium borderline
ONIVA05G12040.1 Flavonoid C4H medium pass
ONIVA06G22810.1 Flavonoid C4H medium borderline
ONIVA09G02590.1 Flavonoid C4H low borderline
ONIVA09G02590.2 Flavonoid C4H low borderline
ONIVA01G00010.1 Rosmarinic Acid C4H low borderline
ONIVA01G00010.2 Rosmarinic Acid C4H medium pass
ONIVA01G00020.1 Rosmarinic Acid C4H low borderline
ONIVA01G00040.1 Rosmarinic Acid C4H low borderline
ONIVA01G00050.1 Rosmarinic Acid C4H medium pass
ONIVA01G00060.1 Rosmarinic Acid C4H medium pass
ONIVA01G00070.1 Rosmarinic Acid C4H medium pass
ONIVA01G06140.1 Rosmarinic Acid C4H low borderline
ONIVA01G07210.1 Rosmarinic Acid C4H low borderline
ONIVA01G07210.2 Rosmarinic Acid C4H low borderline
ONIVA01G07210.3 Rosmarinic Acid C4H low borderline
ONIVA01G09140.1 Rosmarinic Acid C4H low borderline
ONIVA01G09150.1 Rosmarinic Acid C4H low borderline
ONIVA01G10270.1 Rosmarinic Acid C4H medium pass
ONIVA01G10270.2 Rosmarinic Acid C4H medium pass
ONIVA01G10280.1 Rosmarinic Acid C4H low borderline
ONIVA01G10290.1 Rosmarinic Acid C4H medium pass
ONIVA01G10300.1 Rosmarinic Acid C4H low borderline
ONIVA01G10310.1 Rosmarinic Acid C4H medium pass
ONIVA01G10320.1 Rosmarinic Acid C4H medium pass
ONIVA01G10320.2 Rosmarinic Acid C4H medium pass
ONIVA01G10320.3 Rosmarinic Acid C4H medium pass
ONIVA01G10480.1 Rosmarinic Acid C4H low borderline
ONIVA01G10530.1 Rosmarinic Acid C4H low borderline
ONIVA01G10590.1 Rosmarinic Acid C4H medium pass
ONIVA01G18080.1 Rosmarinic Acid C4H medium pass
ONIVA01G21290.1 Rosmarinic Acid C4H low borderline
ONIVA01G21290.2 Rosmarinic Acid C4H low borderline
ONIVA01G21800.1 Rosmarinic Acid C4H medium pass
ONIVA01G22330.1 Rosmarinic Acid C4H low borderline
ONIVA01G25060.1 Rosmarinic Acid C4H low borderline
ONIVA01G25060.2 Rosmarinic Acid C4H low borderline
ONIVA01G26450.1 Rosmarinic Acid C4H low borderline
ONIVA01G26460.1 Rosmarinic Acid C4H low borderline
ONIVA01G26470.1 Rosmarinic Acid C4H low borderline
ONIVA01G26470.2 Rosmarinic Acid C4H low borderline
ONIVA01G31760.1 Rosmarinic Acid C4H low borderline
ONIVA01G31770.1 Rosmarinic Acid C4H low borderline
ONIVA01G31770.2 Rosmarinic Acid C4H low borderline
ONIVA01G39060.1 Rosmarinic Acid C4H low borderline
ONIVA01G40290.1 Rosmarinic Acid C4H medium pass
ONIVA01G50010.1 Rosmarinic Acid C4H low borderline