PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA10G04700.1 Phenylpropanoid LAC medium pass
ONIVA10G06210.1 Phenylpropanoid LAC medium pass
ONIVA10G10110.1 Phenylpropanoid LAC medium pass
ONIVA10G10300.1 Phenylpropanoid LAC medium pass
ONIVA11G00180.1 Phenylpropanoid LAC medium pass
ONIVA11G08680.1 Phenylpropanoid LAC low borderline
ONIVA11G08960.1 Phenylpropanoid LAC medium pass
ONIVA11G10870.1 Phenylpropanoid LAC medium pass
ONIVA11G11610.1 Phenylpropanoid LAC low borderline
ONIVA11G13420.1 Phenylpropanoid LAC medium pass
ONIVA11G23350.1 Phenylpropanoid LAC medium pass
ONIVA12G00640.1 Phenylpropanoid LAC medium pass
ONIVA12G07520.1 Phenylpropanoid LAC medium pass
ONIVA12G07630.1 Phenylpropanoid LAC medium pass
ONIVA12G09010.1 Phenylpropanoid LAC medium pass
ONIVA12G10450.1 Phenylpropanoid LAC medium pass
ONIVA01G06780.1 Phenylpropanoid PAL low borderline
ONIVA02G27060.1 Phenylpropanoid PAL high pass
ONIVA02G27090.1 Phenylpropanoid PAL high pass
ONIVA02G27090.2 Phenylpropanoid PAL high pass
ONIVA02G27090.3 Phenylpropanoid PAL high pass
ONIVA02G27120.1 Phenylpropanoid PAL high pass
ONIVA04G17220.1 Phenylpropanoid PAL high pass
ONIVA05G03470.2 Phenylpropanoid PAL low borderline
ONIVA05G18200.1 Phenylpropanoid PAL high pass
ONIVA06G31320.1 Phenylpropanoid PAL high pass
ONIVA09G08040.1 Phenylpropanoid PAL high pass
ONIVA01G12990.1 Phenylpropanoid POD low borderline
ONIVA01G13300.1 Phenylpropanoid POD medium pass
ONIVA01G13420.1 Phenylpropanoid POD medium pass
ONIVA01G13440.1 Phenylpropanoid POD medium pass
ONIVA01G13440.2 Phenylpropanoid POD medium pass
ONIVA01G13440.3 Phenylpropanoid POD medium pass
ONIVA01G14530.1 Phenylpropanoid POD low borderline
ONIVA01G16570.1 Phenylpropanoid POD medium pass
ONIVA01G16580.1 Phenylpropanoid POD medium pass
ONIVA01G18150.1 Phenylpropanoid POD medium pass
ONIVA01G18940.1 Phenylpropanoid POD low borderline
ONIVA01G18960.1 Phenylpropanoid POD medium pass
ONIVA01G29650.1 Phenylpropanoid POD medium pass
ONIVA01G32510.1 Phenylpropanoid POD low borderline
ONIVA01G37150.1 Phenylpropanoid POD medium pass
ONIVA01G38860.1 Phenylpropanoid POD low borderline
ONIVA01G50980.1 Phenylpropanoid POD medium pass
ONIVA01G50990.1 Phenylpropanoid POD medium pass
ONIVA01G51000.1 Phenylpropanoid POD low borderline
ONIVA02G05630.1 Phenylpropanoid POD medium pass
ONIVA02G08670.1 Phenylpropanoid POD medium pass
ONIVA02G11160.1 Phenylpropanoid POD low borderline
ONIVA02G21520.1 Phenylpropanoid POD low borderline