PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
ONIVA02G22350.1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
ONIVA02G29430.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
ONIVA02G30290.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA02G30700.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
ONIVA02G41250.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G07230.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G07240.1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G07240.2 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G10480.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
ONIVA03G10480.2 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
ONIVA03G14380.1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
ONIVA03G18840.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
ONIVA03G19570.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA03G19580.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA03G19610.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA03G19630.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA03G19640.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA03G24440.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G25020.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G31020.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G31020.2 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G31030.1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G31030.2 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G38100.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G39030.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA03G43010.1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G43010.2 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G43010.3 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G43010.4 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA03G43010.5 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA04G01630.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G01630.2 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G09710.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
ONIVA04G11360.1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
ONIVA04G15840.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
ONIVA04G19570.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
ONIVA04G20470.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G20470.2 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G20470.3 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G24350.1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
ONIVA04G25140.2 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
ONIVA05G02280.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
ONIVA05G02290.1 Phenylpropanoid POD low borderline POD__00002__sp_A5H8G4_PER1_MAIZE
ONIVA05G08600.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
ONIVA05G22420.1 Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
ONIVA05G27010.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
ONIVA05G27020.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
ONIVA06G07130.1 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
ONIVA06G10170.1 Phenylpropanoid POD low borderline POD__00013__sp_Q4W1I8_PER1_ZINEL
ONIVA06G10560.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE