PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
ONIVA01G20650.1 Flavonoid ANR medium borderline
ONIVA01G25780.1 Flavonoid ANR low borderline
ONIVA01G26720.1 Flavonoid ANR medium borderline
ONIVA01G27110.1 Flavonoid ANR low borderline
ONIVA01G27110.2 Flavonoid ANR low borderline
ONIVA02G06700.1 Flavonoid ANR low borderline
ONIVA02G32920.1 Flavonoid ANR low borderline
ONIVA02G32920.2 Flavonoid ANR low borderline
ONIVA03G13180.1 Flavonoid ANR medium pass
ONIVA03G13180.2 Flavonoid ANR medium borderline
ONIVA03G13180.3 Flavonoid ANR medium borderline
ONIVA03G13180.4 Flavonoid ANR medium borderline
ONIVA03G13230.1 Flavonoid ANR medium borderline
ONIVA03G13240.1 Flavonoid ANR medium borderline
ONIVA03G22800.1 Flavonoid ANR low borderline
ONIVA03G24570.1 Flavonoid ANR low borderline
ONIVA03G40480.1 Flavonoid ANR low borderline
ONIVA04G25280.1 Flavonoid ANR medium borderline
ONIVA04G25290.1 Flavonoid ANR medium borderline
ONIVA04G25290.2 Flavonoid ANR medium borderline
ONIVA05G28990.1 Flavonoid ANR low borderline
ONIVA06G25240.2 Flavonoid ANR medium borderline
ONIVA06G27190.1 Flavonoid ANR medium pass
ONIVA06G28110.1 Flavonoid ANR medium borderline
ONIVA06G28110.2 Flavonoid ANR medium borderline
ONIVA07G19570.1 Flavonoid ANR medium borderline
ONIVA07G19910.1 Flavonoid ANR medium pass
ONIVA07G19910.2 Flavonoid ANR medium pass
ONIVA07G19940.1 Flavonoid ANR low borderline
ONIVA07G19940.2 Flavonoid ANR low borderline
ONIVA08G09450.1 Flavonoid ANR medium borderline
ONIVA08G17750.1 Flavonoid ANR medium borderline
ONIVA09G10110.1 Flavonoid ANR medium borderline
ONIVA10G14550.1 Flavonoid ANR medium borderline
ONIVA10G20570.1 Flavonoid ANR low borderline
ONIVA11G09170.1 Flavonoid ANR low borderline
ONIVA02G10660.1 Flavonoid ANS/LDOX low borderline
ONIVA02G10660.2 Flavonoid ANS/LDOX low borderline
ONIVA02G10660.3 Flavonoid ANS/LDOX low borderline
ONIVA02G10660.4 Flavonoid ANS/LDOX low borderline
ONIVA02G24950.1 Flavonoid ANS/LDOX medium pass
ONIVA02G27280.1 Flavonoid ANS/LDOX medium borderline
ONIVA02G36190.1 Flavonoid ANS/LDOX medium borderline
ONIVA05G24420.1 Flavonoid ANS/LDOX medium borderline
ONIVA06G25470.1 Flavonoid ANS/LDOX medium borderline
ONIVA09G06160.1 Flavonoid ANS/LDOX medium borderline
ONIVA09G06160.2 Flavonoid ANS/LDOX medium borderline
ONIVA10G20830.1 Flavonoid ANS/LDOX medium borderline
ONIVA10G20830.2 Flavonoid ANS/LDOX medium borderline
ONIVA11G05770.3 Flavonoid ANS/LDOX medium borderline