PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
ONIVA01G31770.1 Flavonoid C4H medium borderline
ONIVA01G31770.2 Flavonoid C4H medium borderline
ONIVA01G40290.1 Flavonoid C4H medium pass
ONIVA04G05480.1 Flavonoid C4H medium borderline
ONIVA05G12040.1 Flavonoid C4H medium pass
ONIVA06G22810.1 Flavonoid C4H medium borderline
ONIVA09G02590.1 Flavonoid C4H low borderline
ONIVA09G02590.2 Flavonoid C4H low borderline
ONIVA03G40660.1 Flavonoid CHI medium pass
ONIVA06G07700.1 Flavonoid CHI low borderline
ONIVA09G18680.1 Flavonoid CHI low borderline
ONIVA11G00970.1 Flavonoid CHI medium pass
ONIVA11G00970.2 Flavonoid CHI medium pass
ONIVA11G00970.3 Flavonoid CHI medium pass
ONIVA12G00770.1 Flavonoid CHI medium pass
ONIVA12G00770.2 Flavonoid CHI medium pass
ONIVA12G12800.1 Flavonoid CHI medium pass
ONIVA01G13290.1 Flavonoid CHS low borderline
ONIVA01G13290.2 Flavonoid CHS low borderline
ONIVA01G25070.1 Flavonoid CHS medium pass
ONIVA01G43400.1 Flavonoid CHS medium pass
ONIVA03G30360.1 Flavonoid CHS low borderline
ONIVA04G00160.1 Flavonoid CHS medium pass
ONIVA04G05320.1 Flavonoid CHS medium pass
ONIVA05G07970.1 Flavonoid CHS low borderline
ONIVA05G07990.1 Flavonoid CHS medium pass
ONIVA05G15280.1 Flavonoid CHS medium pass
ONIVA07G09520.1 Flavonoid CHS medium pass
ONIVA07G13860.1 Flavonoid CHS medium pass
ONIVA07G13870.1 Flavonoid CHS medium pass
ONIVA09G16060.1 Flavonoid CHS medium pass
ONIVA09G16090.1 Flavonoid CHS medium pass
ONIVA09G16110.1 Flavonoid CHS medium pass
ONIVA10G02480.1 Flavonoid CHS medium pass
ONIVA10G03480.1 Flavonoid CHS medium pass
ONIVA10G03490.1 Flavonoid CHS medium pass
ONIVA10G15130.1 Flavonoid CHS medium pass
ONIVA10G17690.1 Flavonoid CHS medium pass
ONIVA10G17710.1 Flavonoid CHS medium pass
ONIVA11G14960.1 Flavonoid CHS medium pass
ONIVA11G14970.1 Flavonoid CHS medium pass
ONIVA11G15000.1 Flavonoid CHS medium pass
ONIVA11G15010.1 Flavonoid CHS medium pass
ONIVA11G15020.1 Flavonoid CHS medium pass
ONIVA11G15050.1 Flavonoid CHS medium pass
ONIVA12G06300.1 Flavonoid CHS medium pass
ONIVA12G06360.1 Flavonoid CHS medium pass
ONIVA12G06370.1 Flavonoid CHS medium pass
ONIVA01G14060.1 Flavonoid DFR medium borderline
ONIVA01G14060.2 Flavonoid DFR medium borderline