PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
ONIVA02G01000.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G01010.1 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
ONIVA02G06620.1 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
ONIVA02G07360.1 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
ONIVA02G13750.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA02G16320.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G16320.2 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G17140.1 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
ONIVA02G17520.1 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
ONIVA02G18110.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA02G18130.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA02G18200.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA02G19540.1 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
ONIVA02G19540.2 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
ONIVA02G26710.1 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
ONIVA02G27560.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA02G30590.1 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
ONIVA02G30590.2 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
ONIVA02G32220.1 Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
ONIVA02G32820.1 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
ONIVA02G32820.2 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
ONIVA02G34920.1 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
ONIVA02G37020.1 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
ONIVA02G37800.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA02G39780.1 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
ONIVA02G39780.2 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
ONIVA02G39780.3 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
ONIVA02G39780.4 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
ONIVA02G40240.1 Terpenoid BAHD medium pass BAHD__00042__sp_Q500Z2_ZDH20_ARATH
ONIVA02G40350.1 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
ONIVA03G04740.1 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
ONIVA03G06390.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA03G06390.2 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA03G08690.1 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
ONIVA03G13670.1 Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY
ONIVA03G13670.2 Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY
ONIVA03G13670.3 Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY
ONIVA03G18620.1 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA03G18640.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA03G19300.1 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
ONIVA03G21450.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA03G21450.2 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA03G21450.3 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA03G21450.4 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA03G21450.5 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA03G21860.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA03G21940.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA03G21940.3 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA03G22280.1 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
ONIVA03G23110.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH