PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
ONIVA07G09350.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA07G10710.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA07G24010.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G00380.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G00390.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G00420.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G01870.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G02090.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G06300.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G08870.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G08950.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G19280.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G22430.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G22440.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G22470.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G22490.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA08G25690.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G03570.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G12130.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G12140.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G12140.2 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G12150.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G12160.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G13160.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G18350.2 Steroid BR6OX2/CYP85A2 low borderline
ONIVA09G19950.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G03680.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G03700.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G08890.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G10510.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G10520.1 Steroid BR6OX2/CYP85A2 medium borderline
ONIVA10G15210.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G18240.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA10G18800.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G02540.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G02730.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G03030.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G03030.2 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G03370.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G04800.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA11G04930.1 Steroid BR6OX2/CYP85A2 medium borderline
ONIVA11G20980.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA12G00710.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA12G01510.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA12G18900.1 Steroid BR6OX2/CYP85A2 low borderline
ONIVA01G09350.1 Steroid CAS low borderline
ONIVA01G09360.1 Steroid CAS medium pass
ONIVA01G09360.2 Steroid CAS medium pass
ONIVA01G31840.1 Steroid CAS low borderline
ONIVA01G39900.1 Steroid CAS medium pass