PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status Best Target
ONIVA01G39900.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA01G52180.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA01G52180.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA01G52180.3 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA02G03090.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA02G03210.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA02G03230.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
ONIVA02G23310.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23460.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23470.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23470.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23470.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23500.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G23500.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA02G34310.1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
ONIVA03G18310.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19040.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19050.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19060.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19070.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19210.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G19230.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA03G35410.1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA03G35410.2 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA04G02320.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G02320.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G02320.3 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06530.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06560.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.4 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.5 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G06640.6 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA04G24100.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA05G03790.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA05G03790.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA05G19420.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA05G25130.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G12090.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
ONIVA06G18120.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.2 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.3 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.4 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.5 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G18120.6 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
ONIVA06G22460.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA06G22480.1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
ONIVA06G22480.2 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL