PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Family-Level Assignments
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
ONIVA03G35600.1 Rosmarinic Acid C4H low borderline
ONIVA03G36450.1 Rosmarinic Acid C4H low borderline
ONIVA03G36450.2 Rosmarinic Acid C4H low borderline
ONIVA03G36450.3 Rosmarinic Acid C4H low borderline
ONIVA03G41980.1 Rosmarinic Acid C4H low borderline
ONIVA03G43130.1 Rosmarinic Acid C4H low borderline
ONIVA03G43130.2 Rosmarinic Acid C4H medium pass
ONIVA04G00050.1 Rosmarinic Acid C4H medium pass
ONIVA04G01000.1 Rosmarinic Acid C4H low borderline
ONIVA04G01030.1 Rosmarinic Acid C4H low borderline
ONIVA04G02070.1 Rosmarinic Acid C4H low borderline
ONIVA04G02070.2 Rosmarinic Acid C4H low borderline
ONIVA04G02330.1 Rosmarinic Acid C4H low borderline
ONIVA04G02400.1 Rosmarinic Acid C4H low borderline
ONIVA04G05480.1 Rosmarinic Acid C4H low borderline
ONIVA04G06510.1 Rosmarinic Acid C4H medium pass
ONIVA04G09580.1 Rosmarinic Acid C4H low borderline
ONIVA04G13750.1 Rosmarinic Acid C4H low borderline
ONIVA04G14400.1 Rosmarinic Acid C4H medium pass
ONIVA04G14400.2 Rosmarinic Acid C4H low borderline
ONIVA04G14400.3 Rosmarinic Acid C4H low borderline
ONIVA04G14400.4 Rosmarinic Acid C4H low borderline
ONIVA04G18400.1 Rosmarinic Acid C4H low borderline
ONIVA04G20950.1 Rosmarinic Acid C4H low borderline
ONIVA04G21710.1 Rosmarinic Acid C4H low borderline
ONIVA04G21770.1 Rosmarinic Acid C4H medium pass
ONIVA04G27320.1 Rosmarinic Acid C4H low borderline
ONIVA05G00130.1 Rosmarinic Acid C4H low borderline
ONIVA05G03810.1 Rosmarinic Acid C4H low borderline
ONIVA05G05890.1 Rosmarinic Acid C4H low borderline
ONIVA05G07190.1 Rosmarinic Acid C4H low borderline
ONIVA05G12040.1 Rosmarinic Acid C4H medium pass
ONIVA05G13310.1 Rosmarinic Acid C4H low borderline
ONIVA05G14050.1 Rosmarinic Acid C4H low borderline
ONIVA05G14660.1 Rosmarinic Acid C4H low borderline
ONIVA05G16630.1 Rosmarinic Acid C4H low borderline
ONIVA05G17250.1 Rosmarinic Acid C4H low borderline
ONIVA05G17840.1 Rosmarinic Acid C4H medium pass
ONIVA05G20500.1 Rosmarinic Acid C4H low borderline
ONIVA05G20520.1 Rosmarinic Acid C4H low borderline
ONIVA05G22030.1 Rosmarinic Acid C4H medium pass
ONIVA05G23620.1 Rosmarinic Acid C4H low borderline
ONIVA05G24320.1 Rosmarinic Acid C4H low borderline
ONIVA05G27470.1 Rosmarinic Acid C4H low borderline
ONIVA05G29230.1 Rosmarinic Acid C4H low borderline
ONIVA06G00090.1 Rosmarinic Acid C4H low borderline
ONIVA06G00640.1 Rosmarinic Acid C4H low borderline
ONIVA06G02150.1 Rosmarinic Acid C4H low borderline
ONIVA06G02150.2 Rosmarinic Acid C4H low borderline
ONIVA06G06820.1 Rosmarinic Acid C4H low borderline