PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
ONIVA06G06830.1 Rosmarinic Acid C4H low borderline
ONIVA06G07930.1 Rosmarinic Acid C4H low borderline
ONIVA06G07960.1 Rosmarinic Acid C4H medium pass
ONIVA06G11840.1 Rosmarinic Acid C4H medium pass
ONIVA06G11940.1 Rosmarinic Acid C4H low borderline
ONIVA06G12760.1 Rosmarinic Acid C4H low borderline
ONIVA06G13170.1 Rosmarinic Acid C4H medium pass
ONIVA06G14720.1 Rosmarinic Acid C4H low borderline
ONIVA06G14860.1 Rosmarinic Acid C4H medium pass
ONIVA06G15520.1 Rosmarinic Acid C4H low borderline
ONIVA06G17020.1 Rosmarinic Acid C4H low borderline
ONIVA06G18770.1 Rosmarinic Acid C4H low borderline
ONIVA06G18770.2 Rosmarinic Acid C4H low borderline
ONIVA06G18990.1 Rosmarinic Acid C4H medium pass
ONIVA06G19030.1 Rosmarinic Acid C4H low borderline
ONIVA06G22530.1 Rosmarinic Acid C4H low borderline
ONIVA06G22720.1 Rosmarinic Acid C4H low borderline
ONIVA06G22720.2 Rosmarinic Acid C4H low borderline
ONIVA06G22750.1 Rosmarinic Acid C4H low borderline
ONIVA06G22770.1 Rosmarinic Acid C4H low borderline
ONIVA06G22790.1 Rosmarinic Acid C4H low borderline
ONIVA06G22810.1 Rosmarinic Acid C4H low borderline
ONIVA06G23690.1 Rosmarinic Acid C4H low borderline
ONIVA06G24750.1 Rosmarinic Acid C4H medium pass
ONIVA06G24910.1 Rosmarinic Acid C4H medium pass
ONIVA06G25720.1 Rosmarinic Acid C4H low borderline
ONIVA06G26290.1 Rosmarinic Acid C4H low borderline
ONIVA06G26300.1 Rosmarinic Acid C4H low borderline
ONIVA06G26310.1 Rosmarinic Acid C4H low borderline
ONIVA06G26320.1 Rosmarinic Acid C4H low borderline
ONIVA06G26330.1 Rosmarinic Acid C4H low borderline
ONIVA06G26340.1 Rosmarinic Acid C4H medium pass
ONIVA06G30530.1 Rosmarinic Acid C4H low borderline
ONIVA07G05910.1 Rosmarinic Acid C4H low borderline
ONIVA07G09350.1 Rosmarinic Acid C4H medium pass
ONIVA07G09740.1 Rosmarinic Acid C4H low borderline
ONIVA07G10710.1 Rosmarinic Acid C4H low borderline
ONIVA07G13050.1 Rosmarinic Acid C4H low borderline
ONIVA07G13050.2 Rosmarinic Acid C4H low borderline
ONIVA07G14660.1 Rosmarinic Acid C4H low borderline
ONIVA07G14670.1 Rosmarinic Acid C4H low borderline
ONIVA07G14680.2 Rosmarinic Acid C4H low borderline
ONIVA07G14700.1 Rosmarinic Acid C4H low borderline
ONIVA07G14740.1 Rosmarinic Acid C4H low borderline
ONIVA07G19370.2 Rosmarinic Acid C4H medium pass
ONIVA07G20090.1 Rosmarinic Acid C4H medium pass
ONIVA07G24010.1 Rosmarinic Acid C4H low borderline
ONIVA07G26210.1 Rosmarinic Acid C4H low borderline
ONIVA08G00380.1 Rosmarinic Acid C4H medium pass
ONIVA08G00390.1 Rosmarinic Acid C4H low borderline