PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA08G00400.1 Rosmarinic Acid C4H medium pass
ONIVA08G00410.1 Rosmarinic Acid C4H low borderline
ONIVA08G00420.1 Rosmarinic Acid C4H medium pass
ONIVA08G01870.1 Rosmarinic Acid C4H low borderline
ONIVA08G01960.1 Rosmarinic Acid C4H low borderline
ONIVA08G02090.1 Rosmarinic Acid C4H low borderline
ONIVA08G06300.1 Rosmarinic Acid C4H low borderline
ONIVA08G08870.1 Rosmarinic Acid C4H low borderline
ONIVA08G08950.1 Rosmarinic Acid C4H low borderline
ONIVA08G14240.1 Rosmarinic Acid C4H medium pass
ONIVA08G14250.1 Rosmarinic Acid C4H medium pass
ONIVA08G14550.1 Rosmarinic Acid C4H low borderline
ONIVA08G16570.1 Rosmarinic Acid C4H low borderline
ONIVA08G18790.1 Rosmarinic Acid C4H medium pass
ONIVA08G19280.1 Rosmarinic Acid C4H medium pass
ONIVA08G22430.1 Rosmarinic Acid C4H low borderline
ONIVA08G22440.1 Rosmarinic Acid C4H low borderline
ONIVA08G22470.1 Rosmarinic Acid C4H low borderline
ONIVA08G22490.1 Rosmarinic Acid C4H low borderline
ONIVA08G25690.1 Rosmarinic Acid C4H low borderline
ONIVA08G25750.1 Rosmarinic Acid C4H medium pass
ONIVA09G02590.1 Rosmarinic Acid C4H low borderline
ONIVA09G02590.2 Rosmarinic Acid C4H low borderline
ONIVA09G03570.1 Rosmarinic Acid C4H medium pass
ONIVA09G05200.1 Rosmarinic Acid C4H low borderline
ONIVA09G07550.1 Rosmarinic Acid C4H low borderline
ONIVA09G09320.1 Rosmarinic Acid C4H low borderline
ONIVA09G12130.1 Rosmarinic Acid C4H medium pass
ONIVA09G12140.1 Rosmarinic Acid C4H medium pass
ONIVA09G12140.2 Rosmarinic Acid C4H medium pass
ONIVA09G12150.1 Rosmarinic Acid C4H medium pass
ONIVA09G12160.1 Rosmarinic Acid C4H medium pass
ONIVA09G13160.1 Rosmarinic Acid C4H low borderline
ONIVA09G18350.2 Rosmarinic Acid C4H medium pass
ONIVA09G18350.3 Rosmarinic Acid C4H medium pass
ONIVA09G19940.1 Rosmarinic Acid C4H medium pass
ONIVA09G19950.1 Rosmarinic Acid C4H low borderline
ONIVA10G01810.1 Rosmarinic Acid C4H low borderline
ONIVA10G02190.1 Rosmarinic Acid C4H medium pass
ONIVA10G03020.1 Rosmarinic Acid C4H low borderline
ONIVA10G03680.1 Rosmarinic Acid C4H low borderline
ONIVA10G03700.1 Rosmarinic Acid C4H medium pass
ONIVA10G04030.2 Rosmarinic Acid C4H medium pass
ONIVA10G04040.1 Rosmarinic Acid C4H medium pass
ONIVA10G05010.1 Rosmarinic Acid C4H low borderline
ONIVA10G06470.1 Rosmarinic Acid C4H low borderline
ONIVA10G07870.1 Rosmarinic Acid C4H low borderline
ONIVA10G07870.2 Rosmarinic Acid C4H low borderline
ONIVA10G08890.1 Rosmarinic Acid C4H low borderline
ONIVA10G10510.1 Rosmarinic Acid C4H low borderline