PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
ONIVA05G02400.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA05G02420.2 Terpenoid BAHD low borderline BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
ONIVA05G02690.1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA05G04270.1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA05G04450.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA05G05690.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA05G06920.1 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
ONIVA05G10140.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA05G10210.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA05G10210.2 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA05G13850.1 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
ONIVA05G16070.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA05G16070.2 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA05G16070.3 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA05G16070.4 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA05G18710.1 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
ONIVA05G18710.2 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
ONIVA05G19410.1 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
ONIVA05G19530.1 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
ONIVA05G19980.1 Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
ONIVA05G19990.1 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
ONIVA05G19990.2 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
ONIVA05G21890.1 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
ONIVA05G22610.1 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
ONIVA05G26470.1 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
ONIVA06G00330.1 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA06G02350.1 Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
ONIVA06G03960.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA06G03960.2 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA06G04140.1 Terpenoid BAHD medium pass BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
ONIVA06G10210.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA06G10410.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA06G13940.1 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
ONIVA06G13940.2 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
ONIVA06G14490.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA06G15130.1 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
ONIVA06G15150.1 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
ONIVA06G15170.1 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
ONIVA06G15240.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA06G15430.1 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
ONIVA06G15820.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
ONIVA06G18960.1 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA06G18960.2 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA06G19560.1 Terpenoid BAHD low borderline BAHD__00028__sp_O80467_SDT_ARATH
ONIVA06G22440.1 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
ONIVA06G23700.1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA06G23750.1 Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
ONIVA06G23760.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA06G25650.1 Terpenoid BAHD low borderline BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA06G26500.1 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH