PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
ONIVA05G16620.1 Steroid CYP90D1 low borderline
ONIVA07G14630.1 Steroid CYP90D1 medium borderline
ONIVA07G14680.1 Steroid CYP90D1 medium pass
ONIVA07G14700.1 Steroid CYP90D1 low borderline
ONIVA07G14760.1 Steroid CYP90D1 medium borderline
ONIVA07G20090.1 Steroid CYP90D1 low borderline
ONIVA07G26210.1 Steroid CYP90D1 low borderline
ONIVA08G00410.1 Steroid CYP90D1 low borderline
ONIVA08G14240.1 Steroid CYP90D1 low borderline
ONIVA08G14250.1 Steroid CYP90D1 low borderline
ONIVA08G14550.1 Steroid CYP90D1 medium borderline
ONIVA08G16570.1 Steroid CYP90D1 low borderline
ONIVA09G05200.1 Steroid CYP90D1 low borderline
ONIVA10G04030.2 Steroid CYP90D1 low borderline
ONIVA10G05690.1 Steroid CYP90D1 medium borderline
ONIVA10G06470.1 Steroid CYP90D1 low borderline
ONIVA10G07870.2 Steroid CYP90D1 medium borderline
ONIVA11G01290.1 Steroid CYP90D1 low borderline
ONIVA12G00890.1 Steroid CYP90D1 low borderline
ONIVA12G01960.1 Steroid CYP90D1 medium borderline
ONIVA01G03560.1 Steroid DET2 low borderline
ONIVA01G42370.1 Steroid DET2 medium pass
ONIVA11G05490.1 Steroid DET2 medium pass
ONIVA11G05490.2 Steroid DET2 medium pass
ONIVA07G25510.1 Steroid DWF1 low borderline
ONIVA10G08630.1 Steroid DWF1 medium pass
ONIVA10G18900.1 Steroid DWF1 low borderline
ONIVA01G00050.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G00070.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA01G09150.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G10320.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G10320.2 Steroid DWF4/CYP90B1 low borderline
ONIVA01G18920.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G21800.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G25060.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G25060.2 Steroid DWF4/CYP90B1 low borderline
ONIVA01G26450.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G26460.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G26470.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G26470.2 Steroid DWF4/CYP90B1 low borderline
ONIVA01G31760.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G39050.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G39090.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G39110.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G50010.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G51420.1 Steroid DWF4/CYP90B1 low borderline
ONIVA01G51420.3 Steroid DWF4/CYP90B1 low borderline
ONIVA02G05880.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G07500.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G07500.2 Steroid DWF4/CYP90B1 low borderline