PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA02G07520.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G09550.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA02G18910.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G19110.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G19110.2 Steroid DWF4/CYP90B1 low borderline
ONIVA02G19110.3 Steroid DWF4/CYP90B1 low borderline
ONIVA02G32100.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA02G40150.1 Steroid DWF4/CYP90B1 low borderline
ONIVA02G40150.2 Steroid DWF4/CYP90B1 low borderline
ONIVA02G40150.3 Steroid DWF4/CYP90B1 low borderline
ONIVA02G40680.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G02980.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G03000.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G11140.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G19440.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G23930.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G24970.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G29230.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA03G29240.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA03G36450.1 Steroid DWF4/CYP90B1 low borderline
ONIVA03G36450.2 Steroid DWF4/CYP90B1 low borderline
ONIVA03G36450.3 Steroid DWF4/CYP90B1 low borderline
ONIVA04G01250.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G09580.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G14400.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G14400.2 Steroid DWF4/CYP90B1 low borderline
ONIVA04G14400.3 Steroid DWF4/CYP90B1 low borderline
ONIVA04G14400.4 Steroid DWF4/CYP90B1 low borderline
ONIVA04G18400.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G25670.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28680.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28730.1 Steroid DWF4/CYP90B1 low borderline
ONIVA04G28740.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G03810.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G14660.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G15200.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G16630.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G17840.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G24320.1 Steroid DWF4/CYP90B1 low borderline
ONIVA05G29230.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G00090.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G00640.1 Steroid DWF4/CYP90B1 medium borderline
ONIVA06G06820.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G06830.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G07760.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G07960.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22560.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22720.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G22790.1 Steroid DWF4/CYP90B1 low borderline
ONIVA06G23690.1 Steroid DWF4/CYP90B1 low borderline