PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA12G18900.1 Phenylpropanoid C3'H/CYP98A medium borderline
ONIVA01G09140.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA01G09150.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA01G31770.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA01G31770.2 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA01G40290.1 Phenylpropanoid C4H/CYP73A medium pass
ONIVA02G09990.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA02G18910.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA04G05480.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA05G12040.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA05G20520.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA06G11940.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA06G22770.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA06G22790.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA06G22810.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA07G14740.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA09G02590.1 Phenylpropanoid C4H/CYP73A low borderline
ONIVA09G02590.2 Phenylpropanoid C4H/CYP73A low borderline
ONIVA10G02190.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA12G05140.1 Phenylpropanoid C4H/CYP73A medium borderline
ONIVA01G08400.1 Phenylpropanoid CAD medium pass
ONIVA01G16760.1 Phenylpropanoid CAD low borderline
ONIVA01G20650.1 Phenylpropanoid CAD medium borderline
ONIVA02G06700.1 Phenylpropanoid CAD low borderline
ONIVA02G08220.1 Phenylpropanoid CAD medium pass
ONIVA02G17280.1 Phenylpropanoid CAD low borderline
ONIVA02G17280.2 Phenylpropanoid CAD medium pass
ONIVA02G17290.1 Phenylpropanoid CAD medium pass
ONIVA02G17290.2 Phenylpropanoid CAD medium pass
ONIVA02G23410.1 Phenylpropanoid CAD low borderline
ONIVA02G34940.1 Phenylpropanoid CAD medium pass
ONIVA02G34940.2 Phenylpropanoid CAD medium pass
ONIVA03G13180.1 Phenylpropanoid CAD low borderline
ONIVA03G13180.2 Phenylpropanoid CAD medium borderline
ONIVA03G13180.3 Phenylpropanoid CAD medium borderline
ONIVA03G13180.4 Phenylpropanoid CAD medium borderline
ONIVA03G13230.1 Phenylpropanoid CAD medium borderline
ONIVA03G18300.1 Phenylpropanoid CAD low borderline
ONIVA03G18310.1 Phenylpropanoid CAD low borderline
ONIVA03G19050.1 Phenylpropanoid CAD low borderline
ONIVA03G19060.1 Phenylpropanoid CAD low borderline
ONIVA03G19070.1 Phenylpropanoid CAD low borderline
ONIVA03G19210.1 Phenylpropanoid CAD low borderline
ONIVA03G19230.1 Phenylpropanoid CAD low borderline
ONIVA04G00430.1 Phenylpropanoid CAD medium pass
ONIVA04G03260.1 Phenylpropanoid CAD medium pass
ONIVA04G03610.1 Phenylpropanoid CAD low borderline
ONIVA04G06530.1 Phenylpropanoid CAD low borderline
ONIVA04G06550.1 Phenylpropanoid CAD low borderline
ONIVA04G06560.1 Phenylpropanoid CAD low borderline