PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA04G06610.1 Phenylpropanoid CAD low borderline
ONIVA04G06620.1 Phenylpropanoid CAD low borderline
ONIVA04G06640.1 Phenylpropanoid CAD low borderline
ONIVA04G06640.2 Phenylpropanoid CAD low borderline
ONIVA04G06640.3 Phenylpropanoid CAD low borderline
ONIVA04G06640.4 Phenylpropanoid CAD low borderline
ONIVA04G06640.5 Phenylpropanoid CAD low borderline
ONIVA04G06640.6 Phenylpropanoid CAD low borderline
ONIVA04G07140.1 Phenylpropanoid CAD low borderline
ONIVA04G24100.1 Phenylpropanoid CAD low borderline
ONIVA04G24140.2 Phenylpropanoid CAD medium pass
ONIVA04G25280.1 Phenylpropanoid CAD medium borderline
ONIVA04G25290.1 Phenylpropanoid CAD medium borderline
ONIVA04G25290.2 Phenylpropanoid CAD medium borderline
ONIVA05G01100.1 Phenylpropanoid CAD low borderline
ONIVA05G11340.1 Phenylpropanoid CAD low borderline
ONIVA05G11340.2 Phenylpropanoid CAD low borderline
ONIVA05G11340.4 Phenylpropanoid CAD medium pass
ONIVA05G11340.5 Phenylpropanoid CAD medium pass
ONIVA05G11550.1 Phenylpropanoid CAD low borderline
ONIVA05G11550.2 Phenylpropanoid CAD low borderline
ONIVA05G11600.1 Phenylpropanoid CAD low borderline
ONIVA05G11600.2 Phenylpropanoid CAD low borderline
ONIVA05G11600.3 Phenylpropanoid CAD medium pass
ONIVA05G11600.4 Phenylpropanoid CAD low borderline
ONIVA05G11610.1 Phenylpropanoid CAD low borderline
ONIVA06G01080.1 Phenylpropanoid CAD medium pass
ONIVA06G01080.2 Phenylpropanoid CAD medium pass
ONIVA06G12090.1 Phenylpropanoid CAD low borderline
ONIVA06G18310.1 Phenylpropanoid CAD low borderline
ONIVA06G26790.1 Phenylpropanoid CAD low borderline
ONIVA06G28110.1 Phenylpropanoid CAD medium borderline
ONIVA06G28110.2 Phenylpropanoid CAD medium borderline
ONIVA07G10220.1 Phenylpropanoid CAD medium pass
ONIVA08G00640.1 Phenylpropanoid CAD low borderline
ONIVA08G00640.2 Phenylpropanoid CAD low borderline
ONIVA08G02650.1 Phenylpropanoid CAD low borderline
ONIVA08G05620.1 Phenylpropanoid CAD low borderline
ONIVA08G09220.1 Phenylpropanoid CAD medium pass
ONIVA08G23310.1 Phenylpropanoid CAD medium borderline
ONIVA08G23310.2 Phenylpropanoid CAD medium borderline
ONIVA09G08480.1 Phenylpropanoid CAD medium pass
ONIVA09G08500.1 Phenylpropanoid CAD medium pass
ONIVA09G08510.1 Phenylpropanoid CAD medium pass
ONIVA09G08530.1 Phenylpropanoid CAD medium pass
ONIVA09G15600.1 Phenylpropanoid CAD medium borderline
ONIVA09G15600.2 Phenylpropanoid CAD low borderline
ONIVA09G15600.4 Phenylpropanoid CAD low borderline
ONIVA09G18850.1 Phenylpropanoid CAD low borderline
ONIVA10G03100.1 Phenylpropanoid CAD low borderline