PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA04G00320.3 Rosmarinic Acid HPPR medium pass
ONIVA04G00320.4 Rosmarinic Acid HPPR medium pass
ONIVA01G06780.1 Rosmarinic Acid PAL low borderline
ONIVA02G27060.1 Rosmarinic Acid PAL high pass
ONIVA02G27090.1 Rosmarinic Acid PAL high pass
ONIVA02G27090.2 Rosmarinic Acid PAL high pass
ONIVA02G27090.3 Rosmarinic Acid PAL high pass
ONIVA02G27120.1 Rosmarinic Acid PAL high pass
ONIVA04G17220.1 Rosmarinic Acid PAL high pass
ONIVA05G03470.2 Rosmarinic Acid PAL low borderline
ONIVA05G18200.1 Rosmarinic Acid PAL high pass
ONIVA06G31320.1 Rosmarinic Acid PAL high pass
ONIVA09G08040.1 Rosmarinic Acid PAL high pass
ONIVA01G00310.1 Rosmarinic Acid RAS medium pass
ONIVA01G05770.1 Rosmarinic Acid RAS low borderline
ONIVA01G10710.1 Rosmarinic Acid RAS low borderline
ONIVA01G10710.2 Rosmarinic Acid RAS low borderline
ONIVA01G11920.1 Rosmarinic Acid RAS low borderline
ONIVA01G18240.1 Rosmarinic Acid RAS medium pass
ONIVA01G25860.1 Rosmarinic Acid RAS low borderline
ONIVA01G25870.1 Rosmarinic Acid RAS low borderline
ONIVA02G01450.1 Rosmarinic Acid RAS low borderline
ONIVA02G15060.1 Rosmarinic Acid RAS low borderline
ONIVA02G26710.1 Rosmarinic Acid RAS medium pass
ONIVA04G02430.1 Rosmarinic Acid RAS low borderline
ONIVA04G16010.1 Rosmarinic Acid RAS medium pass
ONIVA04G16020.1 Rosmarinic Acid RAS medium pass
ONIVA04G23950.1 Rosmarinic Acid RAS low borderline
ONIVA05G01250.1 Rosmarinic Acid RAS low borderline
ONIVA05G05690.1 Rosmarinic Acid RAS low borderline
ONIVA05G23520.1 Rosmarinic Acid RAS low borderline
ONIVA05G23520.2 Rosmarinic Acid RAS low borderline
ONIVA06G04140.1 Rosmarinic Acid RAS low borderline
ONIVA06G04920.1 Rosmarinic Acid RAS low borderline
ONIVA06G15150.1 Rosmarinic Acid RAS medium pass
ONIVA06G15170.1 Rosmarinic Acid RAS medium pass
ONIVA06G19560.1 Rosmarinic Acid RAS low borderline
ONIVA06G23700.1 Rosmarinic Acid RAS medium pass
ONIVA06G25650.1 Rosmarinic Acid RAS low borderline
ONIVA06G29650.1 Rosmarinic Acid RAS medium pass
ONIVA08G17270.1 Rosmarinic Acid RAS low borderline
ONIVA08G17320.1 Rosmarinic Acid RAS low borderline
ONIVA08G25350.1 Rosmarinic Acid RAS medium pass
ONIVA09G10320.1 Rosmarinic Acid RAS medium pass
ONIVA09G19430.1 Rosmarinic Acid RAS medium pass
ONIVA10G00650.1 Rosmarinic Acid RAS low borderline
ONIVA10G05510.1 Rosmarinic Acid RAS medium pass
ONIVA10G07880.1 Rosmarinic Acid RAS medium pass
ONIVA10G07930.1 Rosmarinic Acid RAS low borderline
ONIVA10G07930.2 Rosmarinic Acid RAS low borderline