PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA10G07930.3 Rosmarinic Acid RAS low borderline
ONIVA10G16890.1 Rosmarinic Acid RAS medium pass
ONIVA11G05390.1 Rosmarinic Acid RAS medium pass
ONIVA11G13980.1 Rosmarinic Acid RAS medium pass
ONIVA01G05700.1 Rosmarinic Acid TAT medium pass
ONIVA02G14620.1 Rosmarinic Acid TAT medium pass
ONIVA02G14620.2 Rosmarinic Acid TAT medium pass
ONIVA02G14670.1 Rosmarinic Acid TAT medium pass
ONIVA02G14760.1 Rosmarinic Acid TAT medium pass
ONIVA02G17400.1 Rosmarinic Acid TAT low borderline
ONIVA03G33400.1 Rosmarinic Acid TAT medium pass
ONIVA03G33400.2 Rosmarinic Acid TAT medium pass
ONIVA03G33400.3 Rosmarinic Acid TAT medium pass
ONIVA04G27160.1 Rosmarinic Acid TAT low borderline
ONIVA06G15130.1 Rosmarinic Acid TAT low borderline
ONIVA06G23750.1 Rosmarinic Acid TAT low borderline
ONIVA11G16670.1 Rosmarinic Acid TAT medium pass
ONIVA11G21480.1 Rosmarinic Acid TAT medium pass