PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA05G07700.1 Flavonoid F3H low borderline
ONIVA05G09470.1 Flavonoid F3H low borderline
ONIVA05G17690.1 Flavonoid F3H medium borderline
ONIVA05G20810.1 Flavonoid F3H medium borderline
ONIVA05G23580.1 Flavonoid F3H medium borderline
ONIVA05G26870.1 Flavonoid F3H medium borderline
ONIVA06G05360.1 Flavonoid F3H medium borderline
ONIVA06G05360.2 Flavonoid F3H medium borderline
ONIVA06G05780.1 Flavonoid F3H medium pass
ONIVA06G05780.2 Flavonoid F3H medium borderline
ONIVA06G05790.1 Flavonoid F3H medium borderline
ONIVA06G05800.1 Flavonoid F3H medium borderline
ONIVA06G05810.1 Flavonoid F3H medium borderline
ONIVA06G11260.1 Flavonoid F3H medium borderline
ONIVA06G11260.2 Flavonoid F3H medium borderline
ONIVA06G11270.1 Flavonoid F3H medium borderline
ONIVA06G11270.2 Flavonoid F3H medium borderline
ONIVA06G17110.1 Flavonoid F3H medium borderline
ONIVA06G17130.1 Flavonoid F3H medium borderline
ONIVA06G17170.1 Flavonoid F3H low borderline
ONIVA07G00050.1 Flavonoid F3H low borderline
ONIVA07G03060.1 Flavonoid F3H low borderline
ONIVA07G03070.1 Flavonoid F3H medium pass
ONIVA08G02040.1 Flavonoid F3H medium borderline
ONIVA08G06680.1 Flavonoid F3H medium borderline
ONIVA08G08590.1 Flavonoid F3H medium borderline
ONIVA08G08590.2 Flavonoid F3H medium borderline
ONIVA08G15690.1 Flavonoid F3H low borderline
ONIVA08G15690.2 Flavonoid F3H low borderline
ONIVA08G15690.3 Flavonoid F3H low borderline
ONIVA08G15690.4 Flavonoid F3H low borderline
ONIVA08G20330.1 Flavonoid F3H medium borderline
ONIVA08G20330.2 Flavonoid F3H medium borderline
ONIVA08G26660.1 Flavonoid F3H medium borderline
ONIVA09G02020.1 Flavonoid F3H low borderline
ONIVA09G06130.1 Flavonoid F3H medium borderline
ONIVA09G12860.1 Flavonoid F3H medium borderline
ONIVA09G12930.1 Flavonoid F3H medium borderline
ONIVA10G11960.1 Flavonoid F3H medium borderline
ONIVA10G18130.1 Flavonoid F3H low borderline
ONIVA10G18130.2 Flavonoid F3H low borderline
ONIVA10G18690.1 Flavonoid F3H low borderline
ONIVA10G18700.1 Flavonoid F3H medium borderline
ONIVA10G20820.1 Flavonoid F3H medium borderline
ONIVA10G20860.1 Flavonoid F3H medium borderline
ONIVA10G20890.1 Flavonoid F3H medium borderline
ONIVA11G05770.1 Flavonoid F3H medium borderline
ONIVA11G05770.2 Flavonoid F3H medium borderline
ONIVA11G09150.1 Flavonoid F3H low borderline
ONIVA11G11680.1 Flavonoid F3H medium borderline