PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ONIVA12G15520.1 Flavonoid F3'H/CYP75B medium borderline
ONIVA01G05670.1 Flavonoid F3H medium borderline
ONIVA01G06520.1 Flavonoid F3H low borderline
ONIVA01G06520.2 Flavonoid F3H low borderline
ONIVA01G16710.1 Flavonoid F3H medium borderline
ONIVA01G17320.1 Flavonoid F3H medium borderline
ONIVA01G17330.1 Flavonoid F3H medium borderline
ONIVA01G23160.1 Flavonoid F3H low borderline
ONIVA01G23160.2 Flavonoid F3H low borderline
ONIVA01G23160.3 Flavonoid F3H low borderline
ONIVA01G32450.1 Flavonoid F3H low borderline
ONIVA01G34920.1 Flavonoid F3H low borderline
ONIVA01G35850.1 Flavonoid F3H medium borderline
ONIVA01G39450.1 Flavonoid F3H medium borderline
ONIVA01G41120.1 Flavonoid F3H medium borderline
ONIVA01G44440.1 Flavonoid F3H medium borderline
ONIVA01G48020.1 Flavonoid F3H medium borderline
ONIVA01G49090.1 Flavonoid F3H medium borderline
ONIVA02G13460.1 Flavonoid F3H medium borderline
ONIVA02G13460.2 Flavonoid F3H medium borderline
ONIVA02G15520.1 Flavonoid F3H medium borderline
ONIVA02G15520.2 Flavonoid F3H medium borderline
ONIVA02G19510.1 Flavonoid F3H medium borderline
ONIVA02G19510.2 Flavonoid F3H medium borderline
ONIVA02G19530.1 Flavonoid F3H medium borderline
ONIVA02G25090.1 Flavonoid F3H low borderline
ONIVA02G33560.1 Flavonoid F3H medium borderline
ONIVA02G36190.2 Flavonoid F3H medium borderline
ONIVA03G01410.1 Flavonoid F3H medium borderline
ONIVA03G14690.1 Flavonoid F3H medium borderline
ONIVA03G18610.1 Flavonoid F3H medium pass
ONIVA03G18610.2 Flavonoid F3H low borderline
ONIVA03G24260.1 Flavonoid F3H medium borderline
ONIVA03G27210.1 Flavonoid F3H medium borderline
ONIVA03G31500.1 Flavonoid F3H medium borderline
ONIVA03G44050.1 Flavonoid F3H medium borderline
ONIVA03G44090.1 Flavonoid F3H medium pass
ONIVA04G09570.1 Flavonoid F3H low borderline
ONIVA04G14110.1 Flavonoid F3H medium pass
ONIVA04G17180.1 Flavonoid F3H medium pass
ONIVA04G17340.1 Flavonoid F3H medium borderline
ONIVA04G21960.1 Flavonoid F3H medium borderline
ONIVA04G21960.2 Flavonoid F3H medium borderline
ONIVA04G21960.3 Flavonoid F3H medium borderline
ONIVA04G22000.1 Flavonoid F3H medium borderline
ONIVA04G27000.1 Flavonoid F3H medium borderline
ONIVA05G03300.1 Flavonoid F3H medium borderline
ONIVA05G03310.1 Flavonoid F3H medium borderline
ONIVA05G04470.1 Flavonoid F3H low borderline
ONIVA05G05590.1 Flavonoid F3H medium pass