PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
OoffiChr03g02920.1 Alkaloid 7DLGT low borderline
OoffiChr03g02921.1 Alkaloid 7DLGT low borderline
OoffiChr03g02923.1 Alkaloid 7DLGT high pass
OoffiChr03g02924.1 Alkaloid 7DLGT medium pass
OoffiChr03g03229.1 Alkaloid 7DLGT low borderline
OoffiChr03g03332.1 Alkaloid 7DLGT high pass
OoffiChr04g00439.1 Alkaloid 7DLGT medium pass
OoffiChr04g00443.1 Alkaloid 7DLGT medium pass
OoffiChr04g00447.1 Alkaloid 7DLGT medium pass
OoffiChr04g00922.1 Alkaloid 7DLGT medium pass
OoffiChr04g01170.1 Alkaloid 7DLGT low borderline
OoffiChr04g01247.1 Alkaloid 7DLGT low borderline
OoffiChr04g01249.1 Alkaloid 7DLGT low borderline
OoffiChr04g01256.1 Alkaloid 7DLGT low borderline
OoffiChr04g01432.1 Alkaloid 7DLGT low borderline
OoffiChr04g01433.1 Alkaloid 7DLGT medium pass
OoffiChr04g01434.1 Alkaloid 7DLGT medium pass
OoffiChr04g01489.1 Alkaloid 7DLGT medium pass
OoffiChr05g00458.1 Alkaloid 7DLGT low borderline
OoffiChr05g00459.1 Alkaloid 7DLGT medium pass
OoffiChr05g00475.1 Alkaloid 7DLGT low borderline
OoffiChr05g00627.1 Alkaloid 7DLGT medium pass
OoffiChr05g01800.1 Alkaloid 7DLGT low borderline
OoffiChr05g01801.1 Alkaloid 7DLGT low borderline
OoffiChr05g01802.1 Alkaloid 7DLGT low borderline
OoffiChr05g01952.1 Alkaloid 7DLGT medium pass
OoffiChr05g01953.1 Alkaloid 7DLGT medium pass
OoffiChr05g01954.1 Alkaloid 7DLGT medium pass
OoffiChr05g01955.1 Alkaloid 7DLGT medium pass
OoffiChr05g01956.1 Alkaloid 7DLGT low borderline
OoffiChr05g01958.1 Alkaloid 7DLGT medium pass
OoffiChr06g00541.1 Alkaloid 7DLGT low borderline
OoffiChr06g00576.1 Alkaloid 7DLGT low borderline
OoffiChr06g00691.1 Alkaloid 7DLGT medium pass
OoffiChr06g00743.1 Alkaloid 7DLGT medium pass
OoffiChr06g00995.1 Alkaloid 7DLGT medium pass
OoffiChr06g01031.1 Alkaloid 7DLGT low borderline
OoffiChr06g01032.1 Alkaloid 7DLGT low borderline
OoffiChr06g01033.1 Alkaloid 7DLGT low borderline
OoffiChr06g01062.1 Alkaloid 7DLGT low borderline
OoffiChr06g01063.1 Alkaloid 7DLGT medium pass
OoffiChr06g01064.1 Alkaloid 7DLGT medium pass
OoffiChr06g01070.1 Alkaloid 7DLGT medium pass
OoffiChr06g01195.1 Alkaloid 7DLGT low borderline
OoffiChr06g01301.1 Alkaloid 7DLGT medium pass
OoffiChr06g01707.1 Alkaloid 7DLGT low borderline
OoffiChr06g01708.1 Alkaloid 7DLGT low borderline
OoffiChr06g01737.1 Alkaloid 7DLGT low borderline
OoffiChr06g01738.1 Alkaloid 7DLGT low borderline
OoffiChr07g00540.1 Alkaloid 7DLGT medium pass