PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr07g00540.2 Alkaloid 7DLGT medium pass
OoffiChr07g00542.1 Alkaloid 7DLGT low borderline
OoffiChr07g00642.1 Alkaloid 7DLGT low borderline
OoffiChr07g00645.1 Alkaloid 7DLGT low borderline
OoffiChr07g00646.1 Alkaloid 7DLGT low borderline
OoffiChr07g00859.1 Alkaloid 7DLGT medium pass
OoffiChr07g00860.1 Alkaloid 7DLGT medium pass
OoffiChr07g00861.1 Alkaloid 7DLGT high pass
OoffiChr07g00863.1 Alkaloid 7DLGT medium pass
OoffiChr07g00924.1 Alkaloid 7DLGT low borderline
OoffiChr07g01414.1 Alkaloid 7DLGT medium pass
OoffiChr07g01416.1 Alkaloid 7DLGT high pass
OoffiChr07g01417.1 Alkaloid 7DLGT medium pass
OoffiChr07g01419.1 Alkaloid 7DLGT medium pass
OoffiChr07g01422.1 Alkaloid 7DLGT high pass
OoffiChr07g01487.1 Alkaloid 7DLGT low borderline
OoffiChr07g01489.1 Alkaloid 7DLGT medium pass
OoffiChr07g01490.1 Alkaloid 7DLGT medium pass
OoffiChr07g01540.1 Alkaloid 7DLGT low borderline
OoffiChr07g01771.1 Alkaloid 7DLGT low borderline
OoffiChr07g02122.1 Alkaloid 7DLGT medium pass
OoffiChr08g00051.1 Alkaloid 7DLGT low borderline
OoffiChr08g00418.1 Alkaloid 7DLGT medium pass
OoffiChr08g01430.1 Alkaloid 7DLGT low borderline
OoffiChr08g01433.1 Alkaloid 7DLGT low borderline
OoffiChr08g01434.1 Alkaloid 7DLGT high pass
OoffiChr08g01742.1 Alkaloid 7DLGT low borderline
OoffiChr09g00152.1 Alkaloid 7DLGT medium pass
OoffiChr09g00266.1 Alkaloid 7DLGT medium pass
OoffiChr09g00424.1 Alkaloid 7DLGT medium pass
OoffiChr09g00589.1 Alkaloid 7DLGT low borderline
OoffiChr09g01083.1 Alkaloid 7DLGT low borderline
OoffiChr09g01316.1 Alkaloid 7DLGT low borderline
OoffiChr09g01317.1 Alkaloid 7DLGT low borderline
OoffiChr10g00339.1 Alkaloid 7DLGT medium pass
OoffiChr10g00471.1 Alkaloid 7DLGT low borderline
OoffiChr10g00784.1 Alkaloid 7DLGT low borderline
OoffiChr10g00786.1 Alkaloid 7DLGT low borderline
OoffiChr11g00505.1 Alkaloid 7DLGT low borderline
OoffiChr11g00850.1 Alkaloid 7DLGT low borderline
OoffiChr11g01178.1 Alkaloid 7DLGT medium pass
OoffiChr12g00374.1 Alkaloid 7DLGT low borderline
OoffiChr12g01388.1 Alkaloid 7DLGT medium pass