PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
OoffiChr03g02372.1 Rosmarinic Acid C4H low borderline
OoffiChr03g02941.1 Rosmarinic Acid C4H medium pass
OoffiChr03g03550.1 Rosmarinic Acid C4H medium pass
OoffiChr04g00008.1 Rosmarinic Acid C4H medium pass
OoffiChr04g00119.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00120.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00121.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00229.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00260.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00264.1 Rosmarinic Acid C4H low borderline
OoffiChr04g00460.1 Rosmarinic Acid C4H low borderline
OoffiChr04g01023.1 Rosmarinic Acid C4H low borderline
OoffiChr04g01023.2 Rosmarinic Acid C4H low borderline
OoffiChr04g01059.1 Rosmarinic Acid C4H low borderline
OoffiChr04g01339.1 Rosmarinic Acid C4H medium pass
OoffiChr04g01530.1 Rosmarinic Acid C4H low borderline
OoffiChr05g00010.1 Rosmarinic Acid C4H low borderline
OoffiChr05g00484.1 Rosmarinic Acid C4H low borderline
OoffiChr05g00567.1 Rosmarinic Acid C4H low borderline
OoffiChr05g00951.1 Rosmarinic Acid C4H medium pass
OoffiChr05g01095.1 Rosmarinic Acid C4H medium pass
OoffiChr05g01189.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01339.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01339.2 Rosmarinic Acid C4H low borderline
OoffiChr05g01416.1 Rosmarinic Acid C4H medium pass
OoffiChr05g01712.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01770.1 Rosmarinic Acid C4H medium pass
OoffiChr05g01834.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01835.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01837.1 Rosmarinic Acid C4H low borderline
OoffiChr05g01907.1 Rosmarinic Acid C4H low borderline
OoffiChr06g00035.1 Rosmarinic Acid C4H low borderline
OoffiChr06g00094.1 Rosmarinic Acid C4H medium pass
OoffiChr06g00095.1 Rosmarinic Acid C4H low borderline
OoffiChr06g00096.1 Rosmarinic Acid C4H medium pass
OoffiChr06g00574.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01080.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01322.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01456.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01457.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01677.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01688.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01690.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01767.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01854.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01960.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01961.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01963.1 Rosmarinic Acid C4H medium pass
OoffiChr06g01965.1 Rosmarinic Acid C4H low borderline
OoffiChr06g01965.2 Rosmarinic Acid C4H low borderline