PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.23% Alkaloid pathway 22.02% Phenylpropanoid pathway 19.62% Flavonoid pathway 12.46% Steroid pathway 8.86% Rosmarinic acid pathway 7.81%
Family Distribution
BAHD 6.71% C4H 5.55% C3'H/CYP98A 5.38% POD 4.89% 4CL 3.86% T3O 3.34% UGT 3.3% NMT 3.16%
Other Families 63.81%
More Families (97)
IFS 147 3.03% UFGT 146 3.01% 7DLGT 143 2.95% CYP76 141 2.91% STR 120 2.48% SMT1/SMT2/SMT3 104 2.15% CAS 98 2.02% F3'H/CYP75B 96 1.98% CYP71 96 1.98% BR6OX2/CYP85A2 95 1.96% DWF4/CYP90B1 90 1.86% F3H 89 1.84% SGD 73 1.51% TPS 71 1.46% CAD 64 1.32% GES 59 1.22% CCR 56 1.16% TRI/TRII 49 1.01% CSE 47 0.97% ANR 46 0.95% SLS 45 0.93% FNS 44 0.91% HCT 44 0.91% PMT 42 0.87% PYKS 42 0.87% IFR 42 0.87% LAC 42 0.87% G8O/G8H 41 0.85% CODM/T6ODM 41 0.85% H6H 39 0.8% RAS 39 0.8% NCS 33 0.68% T16H 31 0.64% GS 30 0.62% DFR 30 0.62% CYP51G1 30 0.62% COMT 29 0.6% F5H/CYP84A 28 0.58% FPPS 28 0.58% CYP90D1 26 0.54% BR6OX1/CYP85A1 26 0.54% CNMT 24 0.5% 16OMT 24 0.5% F3'5'H/CYP75A 24 0.5% CHS 24 0.5% PAL 24 0.5% CPD/CYP90A1 24 0.5% CPR 20 0.41% COR 19 0.39% BBE 16 0.33% MPO 16 0.33% 8HGO 16 0.33% SQS/FDFT1 15 0.31% IO 14 0.29% LAMT 14 0.29% TAT 14 0.29% ANS/LDOX 13 0.27% 7DLH 12 0.25% AACT 12 0.25% GGPPS 12 0.25% SQE 11 0.23% CCoAOMT 10 0.21% CYP80B1 9 0.19% ROT3/CYP90C1 9 0.19% CHI 8 0.17% HPPR 8 0.17% MCT/IspD 8 0.17% MVK 8 0.17% XMT_MXMT_DXMT 7 0.14% SMO1/SMO2 7 0.14% DXS 7 0.14% CYP719 6 0.12% HMGR 6 0.12% TDC 5 0.1% HYD1 5 0.1% FLS 4 0.08% DET2 4 0.08% CMK/IspE 4 0.08% PMK 4 0.08% ADC 3 0.06% TYDC_DDC 3 0.06% DWF5 3 0.06% FK 3 0.06% DWF1 3 0.06% DXR 3 0.06% IDI 3 0.06% HDR/IspH 3 0.06% HMGS 3 0.06% ISY 2 0.04% 6OMT_4OMT_SOMT 2 0.04% ODC 2 0.04% DWF7 2 0.04% CPI1 2 0.04% MDS/IspF 2 0.04% MVD 2 0.04% HDS/IspG 2 0.04% CYP80F1 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
OoffiChr08g01543.1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
OoffiChr08g01598.1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr08g01598.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr08g01598.3 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr08g01598.5 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr09g00099.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
OoffiChr09g00646.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
OoffiChr09g01152.5 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr09g01152.8 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr09g01205.1 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
OoffiChr10g01702.1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
OoffiChr11g00551.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
OoffiChr11g00552.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
OoffiChr12g01247.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM