PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
OoffiChr01g00047.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr01g00860.2 Flavonoid F3'H/CYP75B medium borderline
OoffiChr01g00860.3 Flavonoid F3'H/CYP75B medium borderline
OoffiChr01g01388.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr01g01519.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr01g02078.2 Flavonoid F3'H/CYP75B low borderline
OoffiChr01g02797.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr01g03999.2 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00060.1 Flavonoid F3'H/CYP75B medium pass
OoffiChr02g00606.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00608.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00610.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00611.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00613.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00622.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00623.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00625.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g00767.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr02g01506.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g01507.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g01566.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g01567.1 Flavonoid F3'H/CYP75B medium pass
OoffiChr02g01676.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g01751.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g01887.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr02g02014.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr02g03298.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr03g00113.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g01003.1 Flavonoid F3'H/CYP75B medium pass
OoffiChr03g01010.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g01498.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr03g01866.1 Flavonoid F3'H/CYP75B high pass
OoffiChr03g01934.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g01986.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g01995.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g02059.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g02128.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr03g03550.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr04g00229.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr04g00260.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr04g00264.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr04g00460.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr04g01339.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr05g00412.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr05g00484.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr05g01189.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr05g01221.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr05g01339.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr05g01416.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr05g01770.1 Flavonoid F3'H/CYP75B medium borderline