PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
OoffiChr05g01837.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g00289.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr06g01322.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g01688.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr06g01960.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g01961.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g01963.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g01965.1 Flavonoid F3'H/CYP75B medium pass
OoffiChr06g01965.2 Flavonoid F3'H/CYP75B medium pass
OoffiChr06g01966.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr06g02204.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr07g00781.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr07g00783.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr07g00784.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr07g00799.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr07g01804.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr07g01808.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr07g02235.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr07g02493.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr08g00062.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr08g01160.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr08g01223.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr08g01573.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g00198.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g00663.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr09g00861.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g00862.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g01379.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g01379.2 Flavonoid F3'H/CYP75B medium borderline
OoffiChr09g01381.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00190.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00291.2 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00294.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00316.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00319.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00720.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00869.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g00928.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g01314.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g01368.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr10g01369.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr11g00363.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr11g00870.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr12g00221.1 Flavonoid F3'H/CYP75B low borderline
OoffiChr12g00936.1 Flavonoid F3'H/CYP75B medium borderline
OoffiChr12g01574.3 Flavonoid F3'H/CYP75B medium borderline