PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status
OoffiChr01g00395.1 Alkaloid GES low borderline
OoffiChr01g00395.2 Alkaloid GES low borderline
OoffiChr01g01732.1 Alkaloid GES medium pass
OoffiChr01g01979.1 Alkaloid GES medium pass
OoffiChr02g00141.1 Alkaloid GES low borderline
OoffiChr02g00141.2 Alkaloid GES low borderline
OoffiChr02g01179.2 Alkaloid GES low borderline
OoffiChr02g01179.3 Alkaloid GES low borderline
OoffiChr02g01471.1 Alkaloid GES medium pass
OoffiChr02g01472.1 Alkaloid GES low borderline
OoffiChr02g01875.1 Alkaloid GES medium pass
OoffiChr02g01875.2 Alkaloid GES medium pass
OoffiChr02g01878.1 Alkaloid GES medium pass
OoffiChr02g01883.1 Alkaloid GES medium pass
OoffiChr02g01884.1 Alkaloid GES medium pass
OoffiChr02g01888.1 Alkaloid GES low borderline
OoffiChr03g01535.1 Alkaloid GES medium pass
OoffiChr03g01657.1 Alkaloid GES medium pass
OoffiChr03g01658.1 Alkaloid GES medium pass
OoffiChr03g01659.1 Alkaloid GES medium pass
OoffiChr03g01662.1 Alkaloid GES medium pass
OoffiChr03g01663.1 Alkaloid GES low borderline
OoffiChr03g01916.1 Alkaloid GES medium pass
OoffiChr03g01916.2 Alkaloid GES medium pass
OoffiChr04g00042.1 Alkaloid GES medium pass
OoffiChr04g00042.2 Alkaloid GES medium pass
OoffiChr04g00265.1 Alkaloid GES medium pass
OoffiChr04g00265.2 Alkaloid GES medium pass
OoffiChr04g00265.3 Alkaloid GES low borderline
OoffiChr04g00265.4 Alkaloid GES medium pass
OoffiChr04g00269.1 Alkaloid GES medium pass
OoffiChr04g00269.2 Alkaloid GES medium pass
OoffiChr04g00269.3 Alkaloid GES medium pass
OoffiChr04g00269.4 Alkaloid GES low borderline
OoffiChr04g00461.1 Alkaloid GES low borderline
OoffiChr04g00462.1 Alkaloid GES low borderline
OoffiChr04g00464.1 Alkaloid GES low borderline
OoffiChr04g00467.1 Alkaloid GES low borderline
OoffiChr04g00470.1 Alkaloid GES medium pass
OoffiChr04g00474.1 Alkaloid GES medium pass
OoffiChr04g00475.1 Alkaloid GES low borderline
OoffiChr04g00510.1 Alkaloid GES low borderline
OoffiChr04g01760.1 Alkaloid GES medium pass
OoffiChr04g01760.3 Alkaloid GES low borderline
OoffiChr04g01760.4 Alkaloid GES low borderline
OoffiChr04g01760.5 Alkaloid GES low borderline
OoffiChr07g00782.1 Alkaloid GES medium pass
OoffiChr07g00782.3 Alkaloid GES medium pass
OoffiChr07g01550.1 Alkaloid GES low borderline
OoffiChr08g00251.1 Alkaloid GES medium pass