PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
OoffiChr01g00574.1 Flavonoid IFS low borderline
OoffiChr01g00575.1 Flavonoid IFS low borderline
OoffiChr01g00738.1 Flavonoid IFS low borderline
OoffiChr01g00739.1 Flavonoid IFS low borderline
OoffiChr01g00860.1 Flavonoid IFS medium borderline
OoffiChr01g01496.1 Flavonoid IFS medium borderline
OoffiChr01g01952.1 Flavonoid IFS low borderline
OoffiChr01g02076.2 Flavonoid IFS low borderline
OoffiChr01g02076.3 Flavonoid IFS low borderline
OoffiChr01g02077.1 Flavonoid IFS low borderline
OoffiChr01g02077.2 Flavonoid IFS low borderline
OoffiChr01g02077.4 Flavonoid IFS low borderline
OoffiChr01g02078.1 Flavonoid IFS low borderline
OoffiChr01g02078.3 Flavonoid IFS low borderline
OoffiChr01g02079.1 Flavonoid IFS low borderline
OoffiChr01g02079.2 Flavonoid IFS low borderline
OoffiChr01g02418.1 Flavonoid IFS low borderline
OoffiChr01g02465.2 Flavonoid IFS low borderline
OoffiChr01g03380.1 Flavonoid IFS low borderline
OoffiChr01g03959.1 Flavonoid IFS low borderline
OoffiChr02g00614.1 Flavonoid IFS medium borderline
OoffiChr02g00616.1 Flavonoid IFS medium borderline
OoffiChr02g00621.1 Flavonoid IFS medium borderline
OoffiChr02g00876.1 Flavonoid IFS medium borderline
OoffiChr02g00877.1 Flavonoid IFS medium borderline
OoffiChr02g00880.1 Flavonoid IFS medium borderline
OoffiChr02g01353.1 Flavonoid IFS low borderline
OoffiChr02g01559.1 Flavonoid IFS medium borderline
OoffiChr02g01925.1 Flavonoid IFS low borderline
OoffiChr02g02039.1 Flavonoid IFS medium borderline
OoffiChr02g02547.1 Flavonoid IFS low borderline
OoffiChr02g02548.1 Flavonoid IFS low borderline
OoffiChr02g03241.1 Flavonoid IFS low borderline
OoffiChr02g03241.2 Flavonoid IFS low borderline
OoffiChr02g03241.3 Flavonoid IFS low borderline
OoffiChr02g03241.4 Flavonoid IFS low borderline
OoffiChr02g03241.5 Flavonoid IFS low borderline
OoffiChr03g00223.1 Flavonoid IFS medium borderline
OoffiChr03g00249.1 Flavonoid IFS low borderline
OoffiChr03g00260.1 Flavonoid IFS low borderline
OoffiChr03g00262.1 Flavonoid IFS low borderline
OoffiChr03g00485.1 Flavonoid IFS low borderline
OoffiChr03g00854.1 Flavonoid IFS low borderline
OoffiChr03g00866.1 Flavonoid IFS low borderline
OoffiChr03g00888.1 Flavonoid IFS low borderline
OoffiChr03g01105.1 Flavonoid IFS low borderline
OoffiChr03g01107.1 Flavonoid IFS low borderline
OoffiChr03g01680.1 Flavonoid IFS low borderline
OoffiChr03g01680.2 Flavonoid IFS low borderline
OoffiChr03g01680.3 Flavonoid IFS low borderline