PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
OoffiChr07g02236.1 Flavonoid IFS low borderline
OoffiChr07g02237.1 Flavonoid IFS low borderline
OoffiChr07g02237.2 Flavonoid IFS low borderline
OoffiChr07g02291.1 Flavonoid IFS low borderline
OoffiChr08g00049.1 Flavonoid IFS medium borderline
OoffiChr08g00208.1 Flavonoid IFS medium borderline
OoffiChr08g00773.1 Flavonoid IFS medium borderline
OoffiChr08g01357.1 Flavonoid IFS low borderline
OoffiChr08g01807.1 Flavonoid IFS medium borderline
OoffiChr09g00165.1 Flavonoid IFS medium borderline
OoffiChr09g00272.1 Flavonoid IFS medium borderline
OoffiChr09g00453.2 Flavonoid IFS low borderline
OoffiChr09g00859.1 Flavonoid IFS medium borderline
OoffiChr09g00860.1 Flavonoid IFS medium borderline
OoffiChr09g00900.1 Flavonoid IFS medium borderline
OoffiChr09g00966.1 Flavonoid IFS low borderline
OoffiChr09g00966.2 Flavonoid IFS low borderline
OoffiChr10g00291.1 Flavonoid IFS medium borderline
OoffiChr10g00296.1 Flavonoid IFS medium borderline
OoffiChr10g00298.1 Flavonoid IFS medium borderline
OoffiChr10g00396.1 Flavonoid IFS medium borderline
OoffiChr10g00466.1 Flavonoid IFS medium borderline
OoffiChr10g00927.1 Flavonoid IFS low borderline
OoffiChr10g01113.1 Flavonoid IFS low borderline
OoffiChr10g01292.1 Flavonoid IFS medium borderline
OoffiChr10g01304.1 Flavonoid IFS medium borderline
OoffiChr10g01484.1 Flavonoid IFS low borderline
OoffiChr10g01484.2 Flavonoid IFS low borderline
OoffiChr11g00159.1 Flavonoid IFS low borderline
OoffiChr11g00167.1 Flavonoid IFS low borderline
OoffiChr11g00198.1 Flavonoid IFS low borderline
OoffiChr11g00711.1 Flavonoid IFS low borderline
OoffiChr11g00804.1 Flavonoid IFS low borderline
OoffiChr11g00883.1 Flavonoid IFS low borderline
OoffiChr12g00118.1 Flavonoid IFS low borderline
OoffiChr12g00133.1 Flavonoid IFS low borderline
OoffiChr12g00367.1 Flavonoid IFS low borderline
OoffiChr12g00408.1 Flavonoid IFS low borderline
OoffiChr12g00471.1 Flavonoid IFS low borderline
OoffiChr12g00749.1 Flavonoid IFS medium borderline
OoffiChr12g01186.1 Flavonoid IFS low borderline
OoffiChr12g01187.1 Flavonoid IFS low borderline
OoffiChr12g01188.1 Flavonoid IFS low borderline
OoffiChr12g01352.1 Flavonoid IFS low borderline
OoffiChr12g01574.1 Flavonoid IFS medium borderline
OoffiChr12g01574.2 Flavonoid IFS medium borderline
OoffiChr12g01575.1 Flavonoid IFS medium borderline