Oryza officinalis (oryza_officinalis)
Imported from atlas release summary for Oryza officinalis.
1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1998
Candidate Genes
BAHD
6.71%
C4H
5.55%
C3'H/CYP98A
5.38%
POD
4.89%
4CL
3.86%
T3O
3.34%
UGT
3.3%
NMT
3.16%
Other Families
63.81%
More Families (97)
IFS
147
3.03%
UFGT
146
3.01%
7DLGT
143
2.95%
CYP76
141
2.91%
STR
120
2.48%
SMT1/SMT2/SMT3
104
2.15%
CAS
98
2.02%
F3'H/CYP75B
96
1.98%
CYP71
96
1.98%
BR6OX2/CYP85A2
95
1.96%
DWF4/CYP90B1
90
1.86%
F3H
89
1.84%
SGD
73
1.51%
TPS
71
1.46%
CAD
64
1.32%
GES
59
1.22%
CCR
56
1.16%
TRI/TRII
49
1.01%
CSE
47
0.97%
ANR
46
0.95%
SLS
45
0.93%
FNS
44
0.91%
HCT
44
0.91%
PMT
42
0.87%
PYKS
42
0.87%
IFR
42
0.87%
LAC
42
0.87%
G8O/G8H
41
0.85%
CODM/T6ODM
41
0.85%
H6H
39
0.8%
RAS
39
0.8%
NCS
33
0.68%
T16H
31
0.64%
GS
30
0.62%
DFR
30
0.62%
CYP51G1
30
0.62%
COMT
29
0.6%
F5H/CYP84A
28
0.58%
FPPS
28
0.58%
CYP90D1
26
0.54%
BR6OX1/CYP85A1
26
0.54%
CNMT
24
0.5%
16OMT
24
0.5%
F3'5'H/CYP75A
24
0.5%
CHS
24
0.5%
PAL
24
0.5%
CPD/CYP90A1
24
0.5%
CPR
20
0.41%
COR
19
0.39%
BBE
16
0.33%
MPO
16
0.33%
8HGO
16
0.33%
SQS/FDFT1
15
0.31%
IO
14
0.29%
LAMT
14
0.29%
TAT
14
0.29%
ANS/LDOX
13
0.27%
7DLH
12
0.25%
AACT
12
0.25%
GGPPS
12
0.25%
SQE
11
0.23%
CCoAOMT
10
0.21%
CYP80B1
9
0.19%
ROT3/CYP90C1
9
0.19%
CHI
8
0.17%
HPPR
8
0.17%
MCT/IspD
8
0.17%
MVK
8
0.17%
XMT_MXMT_DXMT
7
0.14%
SMO1/SMO2
7
0.14%
DXS
7
0.14%
CYP719
6
0.12%
HMGR
6
0.12%
TDC
5
0.1%
HYD1
5
0.1%
FLS
4
0.08%
DET2
4
0.08%
CMK/IspE
4
0.08%
PMK
4
0.08%
ADC
3
0.06%
TYDC_DDC
3
0.06%
DWF5
3
0.06%
FK
3
0.06%
DWF1
3
0.06%
DXR
3
0.06%
IDI
3
0.06%
HDR/IspH
3
0.06%
HMGS
3
0.06%
ISY
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
ODC
2
0.04%
DWF7
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
MVD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 584 | 19 | BAHD (239) | View species results |
| Alkaloid pathway | 440 | 23 | 7DLGT (66) | View species results |
| Phenylpropanoid pathway | 392 | 11 | POD (200) | View species results |
| Flavonoid pathway | 249 | 12 | UFGT (138) | View species results |
| Steroid pathway | 177 | 13 | SMT1/SMT2/SMT3 (67) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1683 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 408 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OoffiChr01g00577.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| OoffiChr01g00789.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| OoffiChr01g00789.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| OoffiChr01g00789.3 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| OoffiChr01g01477.1 | Alkaloid | NMT | low | borderline | NMT__00030__sp_Q43088_RBCMT_PEA |
| OoffiChr01g02196.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| OoffiChr01g02196.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| OoffiChr01g02395.1 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| OoffiChr01g02419.1 | Alkaloid | NMT | medium | borderline | NMT__00058__sp_Q9FZN8_TCS1_CAMSI |
| OoffiChr01g02943.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| OoffiChr01g03100.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| OoffiChr01g03826.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| OoffiChr01g04065.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| OoffiChr02g00129.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| OoffiChr02g00129.2 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| OoffiChr02g00151.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| OoffiChr02g00287.1 | Alkaloid | NMT | low | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| OoffiChr02g01298.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| OoffiChr02g01298.2 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| OoffiChr02g01767.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| OoffiChr02g01767.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| OoffiChr02g01767.3 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| OoffiChr02g02104.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| OoffiChr02g02111.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| OoffiChr02g02170.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| OoffiChr02g02170.2 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| OoffiChr02g02170.3 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| OoffiChr02g02170.4 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| OoffiChr02g02170.5 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| OoffiChr02g02320.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| OoffiChr02g02536.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| OoffiChr02g02584.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| OoffiChr02g02584.2 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| OoffiChr02g02584.3 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| OoffiChr02g02584.4 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| OoffiChr02g03251.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| OoffiChr02g03251.2 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| OoffiChr02g03292.1 | Alkaloid | NMT | medium | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| OoffiChr03g00231.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| OoffiChr03g00980.2 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| OoffiChr03g01346.1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| OoffiChr03g01346.2 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| OoffiChr03g01346.3 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| OoffiChr03g02069.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| OoffiChr03g02648.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| OoffiChr03g02648.3 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| OoffiChr03g02648.5 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| OoffiChr04g00018.1 | Alkaloid | NMT | medium | borderline | NMT__00051__sp_Q96565_AMNMT_HORVV |
| OoffiChr04g00019.1 | Alkaloid | NMT | medium | borderline | NMT__00051__sp_Q96565_AMNMT_HORVV |
| OoffiChr04g00248.1 | Alkaloid | NMT | medium | borderline | NMT__00051__sp_Q96565_AMNMT_HORVV |