PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
OoffiChr01g00577.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr01g00789.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr01g00789.2 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr01g00789.3 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
OoffiChr01g01477.1 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
OoffiChr01g02196.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr01g02196.2 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr01g02395.1 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
OoffiChr01g02419.1 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
OoffiChr01g02943.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
OoffiChr01g03100.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
OoffiChr01g03826.1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
OoffiChr01g04065.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
OoffiChr02g00129.1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
OoffiChr02g00129.2 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
OoffiChr02g00151.1 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr02g00287.1 Alkaloid NMT low borderline NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
OoffiChr02g01298.1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
OoffiChr02g01298.2 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
OoffiChr02g01767.1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
OoffiChr02g01767.2 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
OoffiChr02g01767.3 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
OoffiChr02g02104.1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
OoffiChr02g02111.1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
OoffiChr02g02170.1 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
OoffiChr02g02170.2 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
OoffiChr02g02170.3 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
OoffiChr02g02170.4 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
OoffiChr02g02170.5 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
OoffiChr02g02320.1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
OoffiChr02g02536.1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
OoffiChr02g02584.1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
OoffiChr02g02584.2 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
OoffiChr02g02584.3 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
OoffiChr02g02584.4 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
OoffiChr02g03251.1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
OoffiChr02g03251.2 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
OoffiChr02g03292.1 Alkaloid NMT medium borderline NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
OoffiChr03g00231.1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
OoffiChr03g00980.2 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
OoffiChr03g01346.1 Alkaloid NMT medium pass NMT__00027__sp_Q10MI4_EZ1_ORYSJ
OoffiChr03g01346.2 Alkaloid NMT medium pass NMT__00027__sp_Q10MI4_EZ1_ORYSJ
OoffiChr03g01346.3 Alkaloid NMT medium pass NMT__00027__sp_Q10MI4_EZ1_ORYSJ
OoffiChr03g02069.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
OoffiChr03g02648.1 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr03g02648.3 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr03g02648.5 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr04g00018.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
OoffiChr04g00019.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
OoffiChr04g00248.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV