PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
OoffiChr04g00249.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
OoffiChr04g00250.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
OoffiChr04g00341.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr04g00786.1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
OoffiChr04g00786.2 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
OoffiChr04g01363.1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
OoffiChr04g01917.1 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr04g01917.2 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr04g01917.3 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr04g01917.4 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
OoffiChr04g02107.1 Alkaloid NMT medium borderline NMT__00010__sp_A4GE70_DXMT1_COFCA
OoffiChr04g02108.1 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
OoffiChr04g02197.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
OoffiChr04g02197.2 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
OoffiChr05g00011.1 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
OoffiChr05g00014.1 Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
OoffiChr05g01752.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
OoffiChr05g01752.2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
OoffiChr05g02092.1 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr05g02092.2 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr05g02092.3 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr05g02092.4 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr05g02092.5 Alkaloid NMT medium pass NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr05g02092.6 Alkaloid NMT medium borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
OoffiChr06g00007.1 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
OoffiChr06g00007.2 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
OoffiChr06g00223.1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
OoffiChr06g00545.1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
OoffiChr06g00545.2 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
OoffiChr06g00863.1 Alkaloid NMT medium borderline NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
OoffiChr06g01013.1 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
OoffiChr06g01057.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr06g01057.2 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr06g01057.3 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
OoffiChr06g01151.1 Alkaloid NMT medium borderline NMT__00038__sp_Q84PP7_MXMT2_COFAR
OoffiChr06g01153.1 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
OoffiChr06g01159.1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
OoffiChr06g01162.1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
OoffiChr06g01703.1 Alkaloid NMT medium borderline NMT__00014__sp_C3SBW0_PNMT_THLFG
OoffiChr06g02524.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr06g02524.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr06g02524.3 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr06g02524.6 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr06g02524.7 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
OoffiChr07g00676.1 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
OoffiChr07g00676.2 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
OoffiChr07g00806.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
OoffiChr07g01201.1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
OoffiChr07g02266.1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
OoffiChr07g02445.1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH