PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
OoffiChr03g00888.1 Alkaloid T3O medium pass
OoffiChr03g01003.1 Alkaloid T3O medium borderline
OoffiChr03g01105.1 Alkaloid T3O low borderline
OoffiChr03g01107.1 Alkaloid T3O low borderline
OoffiChr03g01498.1 Alkaloid T3O medium pass
OoffiChr03g01866.1 Alkaloid T3O medium borderline
OoffiChr03g01934.1 Alkaloid T3O medium borderline
OoffiChr03g01985.1 Alkaloid T3O medium borderline
OoffiChr03g02059.1 Alkaloid T3O medium borderline
OoffiChr03g02070.1 Alkaloid T3O medium borderline
OoffiChr03g02128.1 Alkaloid T3O medium pass
OoffiChr03g02128.2 Alkaloid T3O medium pass
OoffiChr03g02371.1 Alkaloid T3O medium pass
OoffiChr03g02373.1 Alkaloid T3O medium pass
OoffiChr03g02941.1 Alkaloid T3O medium borderline
OoffiChr03g02985.1 Alkaloid T3O low borderline
OoffiChr03g03432.1 Alkaloid T3O medium pass
OoffiChr03g03550.1 Alkaloid T3O medium borderline
OoffiChr04g00008.1 Alkaloid T3O medium borderline
OoffiChr04g00260.1 Alkaloid T3O medium borderline
OoffiChr04g00264.1 Alkaloid T3O medium borderline
OoffiChr04g01059.1 Alkaloid T3O medium borderline
OoffiChr04g01339.1 Alkaloid T3O medium borderline
OoffiChr04g01512.1 Alkaloid T3O medium pass
OoffiChr04g01514.2 Alkaloid T3O low borderline
OoffiChr05g00484.1 Alkaloid T3O medium pass
OoffiChr05g00567.1 Alkaloid T3O medium pass
OoffiChr05g01095.1 Alkaloid T3O medium borderline
OoffiChr05g01221.1 Alkaloid T3O medium pass
OoffiChr05g01510.1 Alkaloid T3O low borderline
OoffiChr05g01770.1 Alkaloid T3O medium borderline
OoffiChr05g01837.1 Alkaloid T3O medium borderline
OoffiChr06g00035.1 Alkaloid T3O medium pass
OoffiChr06g00094.1 Alkaloid T3O medium borderline
OoffiChr06g00096.1 Alkaloid T3O medium borderline
OoffiChr06g01322.1 Alkaloid T3O medium borderline
OoffiChr06g01456.1 Alkaloid T3O medium borderline
OoffiChr06g01457.1 Alkaloid T3O medium borderline
OoffiChr06g01677.1 Alkaloid T3O medium pass
OoffiChr06g01854.1 Alkaloid T3O medium borderline
OoffiChr06g01960.1 Alkaloid T3O medium borderline
OoffiChr06g01961.1 Alkaloid T3O medium borderline
OoffiChr06g01963.1 Alkaloid T3O medium borderline
OoffiChr06g01966.1 Alkaloid T3O medium borderline
OoffiChr06g01967.1 Alkaloid T3O medium borderline
OoffiChr06g01968.1 Alkaloid T3O medium borderline
OoffiChr06g02162.1 Alkaloid T3O medium borderline
OoffiChr06g02205.1 Alkaloid T3O medium borderline
OoffiChr07g00781.1 Alkaloid T3O medium borderline
OoffiChr07g00783.1 Alkaloid T3O medium borderline