PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
OoffiChr07g00784.1 Alkaloid T3O medium borderline
OoffiChr07g00785.1 Alkaloid T3O medium borderline
OoffiChr07g00799.1 Alkaloid T3O medium borderline
OoffiChr07g01111.1 Alkaloid T3O medium borderline
OoffiChr07g01578.1 Alkaloid T3O medium pass
OoffiChr07g01579.1 Alkaloid T3O low borderline
OoffiChr07g01579.2 Alkaloid T3O low borderline
OoffiChr07g01579.3 Alkaloid T3O low borderline
OoffiChr07g01579.4 Alkaloid T3O medium pass
OoffiChr07g01579.6 Alkaloid T3O medium pass
OoffiChr07g01579.7 Alkaloid T3O medium pass
OoffiChr07g01580.1 Alkaloid T3O medium pass
OoffiChr07g01804.1 Alkaloid T3O low borderline
OoffiChr07g01806.1 Alkaloid T3O low borderline
OoffiChr07g02493.1 Alkaloid T3O medium pass
OoffiChr08g00049.1 Alkaloid T3O medium borderline
OoffiChr08g00062.1 Alkaloid T3O medium borderline
OoffiChr08g01572.1 Alkaloid T3O medium borderline
OoffiChr08g01573.1 Alkaloid T3O medium borderline
OoffiChr08g01807.1 Alkaloid T3O medium borderline
OoffiChr09g00165.1 Alkaloid T3O medium borderline
OoffiChr09g00198.1 Alkaloid T3O medium borderline
OoffiChr09g00272.1 Alkaloid T3O medium borderline
OoffiChr09g00859.1 Alkaloid T3O medium borderline
OoffiChr09g00860.1 Alkaloid T3O medium borderline
OoffiChr09g00861.1 Alkaloid T3O medium borderline
OoffiChr09g00862.1 Alkaloid T3O medium borderline
OoffiChr09g01379.1 Alkaloid T3O medium borderline
OoffiChr09g01379.2 Alkaloid T3O medium borderline
OoffiChr09g01381.1 Alkaloid T3O medium borderline
OoffiChr10g00190.1 Alkaloid T3O medium pass
OoffiChr10g00284.1 Alkaloid T3O medium borderline
OoffiChr10g00291.2 Alkaloid T3O medium borderline
OoffiChr10g00294.1 Alkaloid T3O medium borderline
OoffiChr10g00296.1 Alkaloid T3O medium borderline
OoffiChr10g00298.1 Alkaloid T3O medium borderline
OoffiChr10g00316.1 Alkaloid T3O medium borderline
OoffiChr10g00319.1 Alkaloid T3O medium borderline
OoffiChr10g00396.1 Alkaloid T3O medium borderline
OoffiChr10g00466.1 Alkaloid T3O medium borderline
OoffiChr10g00869.1 Alkaloid T3O medium borderline
OoffiChr10g00928.1 Alkaloid T3O medium borderline
OoffiChr10g00928.2 Alkaloid T3O medium pass
OoffiChr10g01113.1 Alkaloid T3O medium pass
OoffiChr10g01292.1 Alkaloid T3O low borderline
OoffiChr10g01301.1 Alkaloid T3O medium borderline
OoffiChr10g01304.1 Alkaloid T3O medium borderline
OoffiChr10g01310.1 Alkaloid T3O medium borderline
OoffiChr10g01369.1 Alkaloid T3O medium pass
OoffiChr11g00167.1 Alkaloid T3O low borderline