PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
OoffiChr01g00520.1 Flavonoid UFGT medium pass
OoffiChr01g00551.1 Flavonoid UFGT medium pass
OoffiChr01g00732.1 Flavonoid UFGT medium pass
OoffiChr01g00733.1 Flavonoid UFGT medium pass
OoffiChr01g00734.1 Flavonoid UFGT medium pass
OoffiChr01g00735.1 Flavonoid UFGT medium pass
OoffiChr01g00737.1 Flavonoid UFGT medium pass
OoffiChr01g01945.1 Flavonoid UFGT medium pass
OoffiChr01g02046.1 Flavonoid UFGT medium pass
OoffiChr01g02047.1 Flavonoid UFGT medium pass
OoffiChr01g02049.1 Flavonoid UFGT medium pass
OoffiChr01g02117.1 Flavonoid UFGT high pass
OoffiChr01g02118.1 Flavonoid UFGT high pass
OoffiChr01g02679.1 Flavonoid UFGT medium pass
OoffiChr01g02680.1 Flavonoid UFGT medium pass
OoffiChr01g02681.1 Flavonoid UFGT medium pass
OoffiChr01g02682.1 Flavonoid UFGT high pass
OoffiChr01g02683.1 Flavonoid UFGT high pass
OoffiChr01g02685.1 Flavonoid UFGT high pass
OoffiChr01g02732.1 Flavonoid UFGT high pass
OoffiChr01g03070.1 Flavonoid UFGT medium pass
OoffiChr01g03422.1 Flavonoid UFGT medium pass
OoffiChr01g03434.1 Flavonoid UFGT low borderline
OoffiChr01g03434.2 Flavonoid UFGT low borderline
OoffiChr01g03434.3 Flavonoid UFGT low borderline
OoffiChr02g00636.1 Flavonoid UFGT high pass
OoffiChr02g00758.1 Flavonoid UFGT medium pass
OoffiChr02g00761.1 Flavonoid UFGT medium pass
OoffiChr02g00762.1 Flavonoid UFGT medium pass
OoffiChr02g00791.2 Flavonoid UFGT low borderline
OoffiChr02g00791.4 Flavonoid UFGT low borderline
OoffiChr02g00810.1 Flavonoid UFGT medium pass
OoffiChr02g00964.1 Flavonoid UFGT medium pass
OoffiChr02g00973.1 Flavonoid UFGT medium pass
OoffiChr02g01390.1 Flavonoid UFGT medium pass
OoffiChr02g01508.1 Flavonoid UFGT low borderline
OoffiChr02g01744.1 Flavonoid UFGT high pass
OoffiChr02g01914.1 Flavonoid UFGT medium pass
OoffiChr02g01915.1 Flavonoid UFGT medium pass
OoffiChr02g01916.1 Flavonoid UFGT medium pass
OoffiChr02g02231.1 Flavonoid UFGT medium pass
OoffiChr02g02829.1 Flavonoid UFGT medium pass
OoffiChr02g02830.1 Flavonoid UFGT high pass
OoffiChr02g02831.1 Flavonoid UFGT medium pass
OoffiChr02g03143.1 Flavonoid UFGT high pass
OoffiChr02g03144.1 Flavonoid UFGT medium pass
OoffiChr03g00088.1 Flavonoid UFGT high pass
OoffiChr03g00785.1 Flavonoid UFGT medium pass
OoffiChr03g02558.1 Flavonoid UFGT high pass
OoffiChr03g02579.1 Flavonoid UFGT medium pass