PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr09g01152.4 Phenylpropanoid CCR medium borderline
OoffiChr09g01152.6 Phenylpropanoid CCR medium borderline
OoffiChr09g01152.7 Phenylpropanoid CCR medium borderline
OoffiChr09g01153.1 Phenylpropanoid CCR medium pass
OoffiChr09g01154.1 Phenylpropanoid CCR medium borderline
OoffiChr09g01155.1 Phenylpropanoid CCR medium borderline
OoffiChr09g01161.1 Phenylpropanoid CCR low borderline
OoffiChr10g01049.1 Phenylpropanoid CCR medium pass
OoffiChr11g00646.1 Phenylpropanoid CCR medium borderline
OoffiChr06g00423.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr06g00423.2 Phenylpropanoid CCoAOMT medium pass
OoffiChr07g01052.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr08g01505.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr08g01506.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr08g01506.2 Phenylpropanoid CCoAOMT medium pass
OoffiChr08g01507.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr09g01065.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr09g01066.1 Phenylpropanoid CCoAOMT medium pass
OoffiChr10g00052.1 Phenylpropanoid CCoAOMT low borderline
OoffiChr01g02834.1 Phenylpropanoid COMT medium pass
OoffiChr02g00374.1 Phenylpropanoid COMT medium pass
OoffiChr02g03292.1 Phenylpropanoid COMT medium pass
OoffiChr04g00019.1 Phenylpropanoid COMT medium pass
OoffiChr04g00248.1 Phenylpropanoid COMT medium pass
OoffiChr04g00249.1 Phenylpropanoid COMT medium pass
OoffiChr04g00250.1 Phenylpropanoid COMT medium pass
OoffiChr05g01902.1 Phenylpropanoid COMT low borderline
OoffiChr05g01903.1 Phenylpropanoid COMT medium pass
OoffiChr06g01019.2 Phenylpropanoid COMT low borderline
OoffiChr07g00525.1 Phenylpropanoid COMT low borderline
OoffiChr08g00328.1 Phenylpropanoid COMT medium pass
OoffiChr08g00417.1 Phenylpropanoid COMT low borderline
OoffiChr08g00417.2 Phenylpropanoid COMT medium pass
OoffiChr08g00793.1 Phenylpropanoid COMT medium pass
OoffiChr08g01282.1 Phenylpropanoid COMT medium pass
OoffiChr09g00463.1 Phenylpropanoid COMT low borderline
OoffiChr09g00505.1 Phenylpropanoid COMT low borderline
OoffiChr10g00085.1 Phenylpropanoid COMT low borderline
OoffiChr10g00522.1 Phenylpropanoid COMT low borderline
OoffiChr11g00801.1 Phenylpropanoid COMT low borderline
OoffiChr11g00802.1 Phenylpropanoid COMT medium pass
OoffiChr11g00987.1 Phenylpropanoid COMT medium pass
OoffiChr12g01121.1 Phenylpropanoid COMT low borderline
OoffiChr12g01123.1 Phenylpropanoid COMT medium pass
OoffiChr12g01125.1 Phenylpropanoid COMT medium pass
OoffiChr12g01719.3 Phenylpropanoid COMT low borderline
OoffiChr12g01719.4 Phenylpropanoid COMT low borderline
OoffiChr12g01719.5 Phenylpropanoid COMT low borderline
OoffiChr01g00776.1 Phenylpropanoid CSE medium pass
OoffiChr01g01279.1 Phenylpropanoid CSE medium pass