PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr03g01941.1 Alkaloid ISY medium pass
OoffiChr02g02647.1 Alkaloid LAMT medium borderline
OoffiChr04g02115.1 Alkaloid LAMT medium borderline
OoffiChr06g00853.1 Alkaloid LAMT medium borderline
OoffiChr06g00861.1 Alkaloid LAMT medium borderline
OoffiChr06g00862.1 Alkaloid LAMT medium borderline
OoffiChr06g01117.1 Alkaloid LAMT medium borderline
OoffiChr06g01118.1 Alkaloid LAMT medium borderline
OoffiChr06g01146.1 Alkaloid LAMT low borderline
OoffiChr06g01462.2 Alkaloid LAMT medium borderline
OoffiChr11g00674.1 Alkaloid LAMT medium borderline
OoffiChr11g00674.3 Alkaloid LAMT medium borderline
OoffiChr11g00675.1 Alkaloid LAMT medium borderline
OoffiChr11g00686.1 Alkaloid LAMT medium borderline
OoffiChr11g00686.2 Alkaloid LAMT medium borderline
OoffiChr02g01989.1 Alkaloid MPO high pass
OoffiChr02g01989.2 Alkaloid MPO high pass
OoffiChr02g01989.3 Alkaloid MPO high pass
OoffiChr02g01989.4 Alkaloid MPO high pass
OoffiChr02g01989.5 Alkaloid MPO high pass
OoffiChr02g01989.6 Alkaloid MPO medium pass
OoffiChr02g01989.7 Alkaloid MPO medium pass
OoffiChr04g00342.1 Alkaloid MPO medium pass
OoffiChr06g01266.1 Alkaloid MPO low borderline
OoffiChr06g01266.2 Alkaloid MPO low borderline
OoffiChr06g01273.1 Alkaloid MPO high pass
OoffiChr06g01273.2 Alkaloid MPO medium pass
OoffiChr07g01504.1 Alkaloid MPO high pass
OoffiChr07g01504.2 Alkaloid MPO medium pass
OoffiChr07g01836.1 Alkaloid MPO high pass
OoffiChr07g02024.1 Alkaloid MPO low borderline
OoffiChr01g00612.1 Alkaloid NCS medium borderline
OoffiChr01g01391.1 Alkaloid NCS medium borderline
OoffiChr03g01922.1 Alkaloid NCS medium borderline
OoffiChr03g01923.1 Alkaloid NCS medium borderline
OoffiChr03g02769.1 Alkaloid NCS medium borderline
OoffiChr04g01631.1 Alkaloid NCS medium pass
OoffiChr04g01632.1 Alkaloid NCS low borderline
OoffiChr06g00481.1 Alkaloid NCS medium borderline
OoffiChr06g00908.1 Alkaloid NCS medium borderline
OoffiChr07g01499.1 Alkaloid NCS medium borderline
OoffiChr09g00485.1 Alkaloid NCS medium borderline
OoffiChr09g00486.1 Alkaloid NCS medium borderline
OoffiChr09g00934.1 Alkaloid NCS medium borderline
OoffiChr09g00935.1 Alkaloid NCS medium borderline
OoffiChr10g01357.1 Alkaloid NCS medium borderline
OoffiChr10g01358.1 Alkaloid NCS medium borderline
OoffiChr10g01359.2 Alkaloid NCS medium borderline
OoffiChr10g01359.4 Alkaloid NCS medium borderline
OoffiChr10g01360.1 Alkaloid NCS medium borderline