PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr04g01514.2 Flavonoid IFS low borderline
OoffiChr04g01530.1 Flavonoid IFS low borderline
OoffiChr05g00010.1 Flavonoid IFS low borderline
OoffiChr05g00567.1 Flavonoid IFS low borderline
OoffiChr05g01095.1 Flavonoid IFS medium borderline
OoffiChr05g01339.2 Flavonoid IFS low borderline
OoffiChr05g01510.1 Flavonoid IFS low borderline
OoffiChr05g01712.1 Flavonoid IFS low borderline
OoffiChr05g01834.1 Flavonoid IFS low borderline
OoffiChr06g00096.1 Flavonoid IFS medium borderline
OoffiChr06g00573.1 Flavonoid IFS low borderline
OoffiChr06g00574.1 Flavonoid IFS low borderline
OoffiChr06g01456.1 Flavonoid IFS medium borderline
OoffiChr06g01457.1 Flavonoid IFS medium borderline
OoffiChr06g01689.1 Flavonoid IFS low borderline
OoffiChr06g01767.1 Flavonoid IFS low borderline
OoffiChr06g01854.1 Flavonoid IFS medium borderline
OoffiChr06g01967.1 Flavonoid IFS medium borderline
OoffiChr06g01968.1 Flavonoid IFS medium borderline
OoffiChr06g01969.1 Flavonoid IFS medium borderline
OoffiChr06g02162.1 Flavonoid IFS medium borderline
OoffiChr06g02205.1 Flavonoid IFS medium borderline
OoffiChr07g00785.1 Flavonoid IFS medium borderline
OoffiChr07g00984.1 Flavonoid IFS medium borderline
OoffiChr07g01067.1 Flavonoid IFS low borderline
OoffiChr07g01111.1 Flavonoid IFS medium borderline
OoffiChr07g01163.1 Flavonoid IFS low borderline
OoffiChr07g01262.1 Flavonoid IFS low borderline
OoffiChr07g01263.1 Flavonoid IFS medium borderline
OoffiChr07g01578.1 Flavonoid IFS low borderline
OoffiChr07g01579.1 Flavonoid IFS low borderline
OoffiChr07g01579.2 Flavonoid IFS low borderline
OoffiChr07g01579.3 Flavonoid IFS low borderline
OoffiChr07g01579.4 Flavonoid IFS low borderline
OoffiChr07g01579.5 Flavonoid IFS low borderline
OoffiChr07g01579.6 Flavonoid IFS low borderline
OoffiChr07g01579.7 Flavonoid IFS low borderline
OoffiChr07g01580.1 Flavonoid IFS low borderline
OoffiChr07g02236.1 Flavonoid IFS low borderline
OoffiChr07g02237.1 Flavonoid IFS low borderline
OoffiChr07g02237.2 Flavonoid IFS low borderline
OoffiChr07g02291.1 Flavonoid IFS low borderline
OoffiChr08g00049.1 Flavonoid IFS medium borderline
OoffiChr08g00208.1 Flavonoid IFS medium borderline
OoffiChr08g00773.1 Flavonoid IFS medium borderline
OoffiChr08g01357.1 Flavonoid IFS low borderline
OoffiChr08g01807.1 Flavonoid IFS medium borderline
OoffiChr09g00165.1 Flavonoid IFS medium borderline
OoffiChr09g00272.1 Flavonoid IFS medium borderline
OoffiChr09g00453.2 Flavonoid IFS low borderline