PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr08g00569.3 Terpenoid MCT/IspD low borderline
OoffiChr08g01826.7 Terpenoid MCT/IspD low borderline
OoffiChr11g01233.1 Terpenoid MCT/IspD low borderline
OoffiChr01g04104.1 Terpenoid MDS/IspF low borderline
OoffiChr02g02468.1 Terpenoid MDS/IspF high pass
OoffiChr02g00062.1 Terpenoid MVD medium pass
OoffiChr12g00492.1 Terpenoid MVD low borderline
OoffiChr02g03345.1 Terpenoid MVK low borderline
OoffiChr03g03404.1 Terpenoid MVK low borderline
OoffiChr07g00920.1 Terpenoid MVK low borderline
OoffiChr13g00054.1 Terpenoid MVK medium pass
OoffiChr13g00054.2 Terpenoid MVK medium pass
OoffiChr13g00054.3 Terpenoid MVK medium pass
OoffiChr13g00054.4 Terpenoid MVK medium pass
OoffiChr13g00054.5 Terpenoid MVK medium pass
OoffiChr03g01029.1 Terpenoid PMK medium pass
OoffiChr03g01029.2 Terpenoid PMK medium pass
OoffiChr03g02534.1 Terpenoid PMK medium pass
OoffiChr06g02478.2 Terpenoid PMK low borderline
OoffiChr01g01343.1 Terpenoid TPS medium pass
OoffiChr01g01732.1 Terpenoid TPS medium pass
OoffiChr01g01979.1 Terpenoid TPS medium pass
OoffiChr02g00141.1 Terpenoid TPS medium pass
OoffiChr02g00141.2 Terpenoid TPS medium pass
OoffiChr02g01179.2 Terpenoid TPS medium pass
OoffiChr02g01179.3 Terpenoid TPS medium pass
OoffiChr02g01471.1 Terpenoid TPS medium pass
OoffiChr02g01472.1 Terpenoid TPS medium pass
OoffiChr02g01875.1 Terpenoid TPS medium pass
OoffiChr02g01875.2 Terpenoid TPS medium pass
OoffiChr02g01878.1 Terpenoid TPS medium pass
OoffiChr02g01883.1 Terpenoid TPS medium pass
OoffiChr02g01884.1 Terpenoid TPS medium pass
OoffiChr02g01888.1 Terpenoid TPS medium pass
OoffiChr03g01535.1 Terpenoid TPS medium pass
OoffiChr03g01657.1 Terpenoid TPS medium pass
OoffiChr03g01658.1 Terpenoid TPS medium pass
OoffiChr03g01659.1 Terpenoid TPS medium pass
OoffiChr03g01662.1 Terpenoid TPS medium pass
OoffiChr03g01663.1 Terpenoid TPS medium pass
OoffiChr03g01916.1 Terpenoid TPS medium pass
OoffiChr03g01916.2 Terpenoid TPS medium pass
OoffiChr04g00042.1 Terpenoid TPS medium pass
OoffiChr04g00042.2 Terpenoid TPS medium pass
OoffiChr04g00262.1 Terpenoid TPS medium pass
OoffiChr04g00263.1 Terpenoid TPS medium pass
OoffiChr04g00265.1 Terpenoid TPS medium pass
OoffiChr04g00265.2 Terpenoid TPS medium pass
OoffiChr04g00265.3 Terpenoid TPS medium pass
OoffiChr04g00265.4 Terpenoid TPS medium pass