PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr03g03229.1 Flavonoid UFGT high pass
OoffiChr03g03332.1 Flavonoid UFGT medium pass
OoffiChr04g00439.1 Flavonoid UFGT high pass
OoffiChr04g00443.1 Flavonoid UFGT high pass
OoffiChr04g00447.1 Flavonoid UFGT medium pass
OoffiChr04g00922.1 Flavonoid UFGT medium pass
OoffiChr04g01170.1 Flavonoid UFGT medium pass
OoffiChr04g01247.1 Flavonoid UFGT high pass
OoffiChr04g01249.1 Flavonoid UFGT high pass
OoffiChr04g01256.1 Flavonoid UFGT medium pass
OoffiChr04g01432.1 Flavonoid UFGT medium pass
OoffiChr04g01433.1 Flavonoid UFGT medium pass
OoffiChr04g01434.1 Flavonoid UFGT high pass
OoffiChr04g01489.1 Flavonoid UFGT medium pass
OoffiChr05g00458.1 Flavonoid UFGT high pass
OoffiChr05g00459.1 Flavonoid UFGT medium pass
OoffiChr05g00475.1 Flavonoid UFGT medium pass
OoffiChr05g00627.1 Flavonoid UFGT medium pass
OoffiChr05g01800.1 Flavonoid UFGT medium pass
OoffiChr05g01801.1 Flavonoid UFGT high pass
OoffiChr05g01802.1 Flavonoid UFGT medium pass
OoffiChr05g01952.1 Flavonoid UFGT medium pass
OoffiChr05g01953.1 Flavonoid UFGT high pass
OoffiChr05g01954.1 Flavonoid UFGT high pass
OoffiChr05g01955.1 Flavonoid UFGT medium pass
OoffiChr05g01956.1 Flavonoid UFGT medium pass
OoffiChr05g01958.1 Flavonoid UFGT high pass
OoffiChr06g00541.1 Flavonoid UFGT medium pass
OoffiChr06g00576.1 Flavonoid UFGT high pass
OoffiChr06g00691.1 Flavonoid UFGT medium pass
OoffiChr06g00743.1 Flavonoid UFGT high pass
OoffiChr06g00995.1 Flavonoid UFGT medium pass
OoffiChr06g01031.1 Flavonoid UFGT medium pass
OoffiChr06g01032.1 Flavonoid UFGT medium pass
OoffiChr06g01033.1 Flavonoid UFGT medium pass
OoffiChr06g01062.1 Flavonoid UFGT medium pass
OoffiChr06g01063.1 Flavonoid UFGT high pass
OoffiChr06g01064.1 Flavonoid UFGT high pass
OoffiChr06g01070.1 Flavonoid UFGT medium pass
OoffiChr06g01195.1 Flavonoid UFGT medium pass
OoffiChr06g01301.1 Flavonoid UFGT medium pass
OoffiChr06g01707.1 Flavonoid UFGT medium pass
OoffiChr06g01708.1 Flavonoid UFGT medium pass
OoffiChr06g01737.1 Flavonoid UFGT medium pass
OoffiChr06g01738.1 Flavonoid UFGT medium pass
OoffiChr07g00540.1 Flavonoid UFGT medium pass
OoffiChr07g00540.2 Flavonoid UFGT medium pass
OoffiChr07g00542.1 Flavonoid UFGT low borderline
OoffiChr07g00642.1 Flavonoid UFGT high pass
OoffiChr07g00643.1 Flavonoid UFGT medium pass