PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
OoffiChr11g00313.1 Flavonoid 4CL low borderline
OoffiChr11g00313.2 Flavonoid 4CL low borderline
OoffiChr11g00816.1 Flavonoid 4CL medium pass
OoffiChr11g00816.2 Flavonoid 4CL medium pass
OoffiChr11g01076.1 Flavonoid 4CL low borderline
OoffiChr11g01076.2 Flavonoid 4CL low borderline
OoffiChr12g00379.1 Flavonoid 4CL low borderline
OoffiChr12g00439.1 Flavonoid 4CL low borderline
OoffiChr12g00439.2 Flavonoid 4CL low borderline
OoffiChr12g00600.1 Flavonoid 4CL medium pass
OoffiChr12g00736.1 Flavonoid 4CL low borderline
OoffiChr12g00736.2 Flavonoid 4CL low borderline
OoffiChr01g01668.1 Flavonoid ANR medium borderline
OoffiChr01g02097.1 Flavonoid ANR medium borderline
OoffiChr01g02124.1 Flavonoid ANR low borderline
OoffiChr01g02124.2 Flavonoid ANR low borderline
OoffiChr01g04147.1 Flavonoid ANR low borderline
OoffiChr02g02626.1 Flavonoid ANR low borderline
OoffiChr03g00587.1 Flavonoid ANR low borderline
OoffiChr03g01822.3 Flavonoid ANR low borderline
OoffiChr03g03315.1 Flavonoid ANR medium borderline
OoffiChr03g03315.2 Flavonoid ANR medium borderline
OoffiChr04g01904.1 Flavonoid ANR medium borderline
OoffiChr04g01905.1 Flavonoid ANR medium borderline
OoffiChr04g01908.1 Flavonoid ANR medium borderline
OoffiChr04g01908.2 Flavonoid ANR medium borderline
OoffiChr04g01908.3 Flavonoid ANR medium borderline
OoffiChr04g01909.1 Flavonoid ANR medium borderline
OoffiChr04g01910.1 Flavonoid ANR medium borderline
OoffiChr05g02295.1 Flavonoid ANR low borderline
OoffiChr06g01890.1 Flavonoid ANR medium borderline
OoffiChr06g01890.2 Flavonoid ANR medium borderline
OoffiChr06g02049.1 Flavonoid ANR medium borderline
OoffiChr06g02050.1 Flavonoid ANR medium borderline
OoffiChr06g02050.2 Flavonoid ANR low borderline
OoffiChr06g02238.1 Flavonoid ANR medium borderline
OoffiChr07g00481.1 Flavonoid ANR medium borderline
OoffiChr07g02004.1 Flavonoid ANR medium pass
OoffiChr07g02005.1 Flavonoid ANR low borderline
OoffiChr07g02005.2 Flavonoid ANR low borderline
OoffiChr07g02005.3 Flavonoid ANR low borderline
OoffiChr07g02007.1 Flavonoid ANR medium borderline
OoffiChr08g00493.1 Flavonoid ANR medium borderline
OoffiChr08g00493.2 Flavonoid ANR medium borderline
OoffiChr08g00774.1 Flavonoid ANR medium borderline
OoffiChr08g01029.1 Flavonoid ANR medium borderline
OoffiChr08g01230.1 Flavonoid ANR medium borderline
OoffiChr09g00744.1 Flavonoid ANR medium borderline
OoffiChr09g01138.1 Flavonoid ANR low borderline
OoffiChr09g01152.3 Flavonoid ANR medium borderline