Oryza officinalis (oryza_officinalis)
Imported from atlas release summary for Oryza officinalis.
2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4847
Family-Level Calls
BAHD
6.71%
C4H
5.55%
C3'H/CYP98A
5.38%
POD
4.89%
4CL
3.86%
T3O
3.34%
UGT
3.3%
NMT
3.16%
Other Families
63.81%
More Families (97)
IFS
147
3.03%
UFGT
146
3.01%
7DLGT
143
2.95%
CYP76
141
2.91%
STR
120
2.48%
SMT1/SMT2/SMT3
104
2.15%
CAS
98
2.02%
F3'H/CYP75B
96
1.98%
CYP71
96
1.98%
BR6OX2/CYP85A2
95
1.96%
DWF4/CYP90B1
90
1.86%
F3H
89
1.84%
SGD
73
1.51%
TPS
71
1.46%
CAD
64
1.32%
GES
59
1.22%
CCR
56
1.16%
TRI/TRII
49
1.01%
CSE
47
0.97%
ANR
46
0.95%
SLS
45
0.93%
FNS
44
0.91%
HCT
44
0.91%
PMT
42
0.87%
PYKS
42
0.87%
IFR
42
0.87%
LAC
42
0.87%
G8O/G8H
41
0.85%
CODM/T6ODM
41
0.85%
H6H
39
0.8%
RAS
39
0.8%
NCS
33
0.68%
T16H
31
0.64%
GS
30
0.62%
DFR
30
0.62%
CYP51G1
30
0.62%
COMT
29
0.6%
F5H/CYP84A
28
0.58%
FPPS
28
0.58%
CYP90D1
26
0.54%
BR6OX1/CYP85A1
26
0.54%
CNMT
24
0.5%
16OMT
24
0.5%
F3'5'H/CYP75A
24
0.5%
CHS
24
0.5%
PAL
24
0.5%
CPD/CYP90A1
24
0.5%
CPR
20
0.41%
COR
19
0.39%
BBE
16
0.33%
MPO
16
0.33%
8HGO
16
0.33%
SQS/FDFT1
15
0.31%
IO
14
0.29%
LAMT
14
0.29%
TAT
14
0.29%
ANS/LDOX
13
0.27%
7DLH
12
0.25%
AACT
12
0.25%
GGPPS
12
0.25%
SQE
11
0.23%
CCoAOMT
10
0.21%
CYP80B1
9
0.19%
ROT3/CYP90C1
9
0.19%
CHI
8
0.17%
HPPR
8
0.17%
MCT/IspD
8
0.17%
MVK
8
0.17%
XMT_MXMT_DXMT
7
0.14%
SMO1/SMO2
7
0.14%
DXS
7
0.14%
CYP719
6
0.12%
HMGR
6
0.12%
TDC
5
0.1%
HYD1
5
0.1%
FLS
4
0.08%
DET2
4
0.08%
CMK/IspE
4
0.08%
PMK
4
0.08%
ADC
3
0.06%
TYDC_DDC
3
0.06%
DWF5
3
0.06%
FK
3
0.06%
DWF1
3
0.06%
DXR
3
0.06%
IDI
3
0.06%
HDR/IspH
3
0.06%
HMGS
3
0.06%
ISY
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
ODC
2
0.04%
DWF7
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
MVD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 584 | 19 | BAHD (239) | View species results |
| Alkaloid pathway | 440 | 23 | 7DLGT (66) | View species results |
| Phenylpropanoid pathway | 392 | 11 | POD (200) | View species results |
| Flavonoid pathway | 249 | 12 | UFGT (138) | View species results |
| Steroid pathway | 177 | 13 | SMT1/SMT2/SMT3 (67) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1683 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 408 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| OoffiChr02g00947.5 | Alkaloid | STR | low | borderline |
| OoffiChr02g00947.6 | Alkaloid | STR | medium | pass |
| OoffiChr02g00947.7 | Alkaloid | STR | low | borderline |
| OoffiChr02g00947.8 | Alkaloid | STR | low | borderline |
| OoffiChr02g00947.9 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.11 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.13 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.14 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.15 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.5 | Alkaloid | STR | low | borderline |
| OoffiChr02g01337.9 | Alkaloid | STR | low | borderline |
| OoffiChr03g00391.1 | Alkaloid | STR | low | borderline |
| OoffiChr03g00391.2 | Alkaloid | STR | low | borderline |
| OoffiChr03g00391.3 | Alkaloid | STR | medium | pass |
| OoffiChr03g01078.1 | Alkaloid | STR | medium | pass |
| OoffiChr03g01203.1 | Alkaloid | STR | medium | pass |
| OoffiChr03g01204.1 | Alkaloid | STR | medium | pass |
| OoffiChr03g01672.1 | Alkaloid | STR | medium | pass |
| OoffiChr03g01938.1 | Alkaloid | STR | low | borderline |
| OoffiChr03g01938.2 | Alkaloid | STR | low | borderline |
| OoffiChr03g02889.1 | Alkaloid | STR | low | borderline |
| OoffiChr03g02889.2 | Alkaloid | STR | medium | pass |
| OoffiChr04g01031.1 | Alkaloid | STR | low | borderline |
| OoffiChr04g01274.1 | Alkaloid | STR | low | borderline |
| OoffiChr05g00133.1 | Alkaloid | STR | medium | pass |
| OoffiChr05g00135.1 | Alkaloid | STR | medium | pass |
| OoffiChr05g00673.1 | Alkaloid | STR | low | borderline |
| OoffiChr05g00673.2 | Alkaloid | STR | low | borderline |
| OoffiChr05g01036.1 | Alkaloid | STR | low | borderline |
| OoffiChr05g01037.1 | Alkaloid | STR | medium | pass |
| OoffiChr06g01630.1 | Alkaloid | STR | low | borderline |
| OoffiChr06g01630.2 | Alkaloid | STR | low | borderline |
| OoffiChr06g01630.3 | Alkaloid | STR | low | borderline |
| OoffiChr06g01630.4 | Alkaloid | STR | low | borderline |
| OoffiChr06g01630.5 | Alkaloid | STR | low | borderline |
| OoffiChr06g01630.6 | Alkaloid | STR | low | borderline |
| OoffiChr06g01807.1 | Alkaloid | STR | low | borderline |
| OoffiChr06g01891.1 | Alkaloid | STR | low | borderline |
| OoffiChr06g01893.1 | Alkaloid | STR | medium | pass |
| OoffiChr06g02522.1 | Alkaloid | STR | low | borderline |
| OoffiChr07g00519.1 | Alkaloid | STR | low | borderline |
| OoffiChr07g00606.1 | Alkaloid | STR | medium | pass |
| OoffiChr07g01119.1 | Alkaloid | STR | low | borderline |
| OoffiChr07g01119.2 | Alkaloid | STR | low | borderline |
| OoffiChr07g01119.3 | Alkaloid | STR | low | borderline |
| OoffiChr07g01119.4 | Alkaloid | STR | low | borderline |
| OoffiChr07g01590.1 | Alkaloid | STR | low | borderline |
| OoffiChr07g01590.2 | Alkaloid | STR | low | borderline |
| OoffiChr07g01590.3 | Alkaloid | STR | low | borderline |
| OoffiChr08g00408.1 | Alkaloid | STR | low | borderline |