PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr03g01986.1 Alkaloid T16H medium borderline
OoffiChr04g00121.1 Alkaloid T16H medium borderline
OoffiChr04g02024.1 Alkaloid T16H medium borderline
OoffiChr05g01416.1 Alkaloid T16H medium borderline
OoffiChr05g01834.1 Alkaloid T16H medium pass
OoffiChr05g01835.1 Alkaloid T16H medium borderline
OoffiChr06g01965.1 Alkaloid T16H medium borderline
OoffiChr06g01965.2 Alkaloid T16H medium borderline
OoffiChr06g01969.1 Alkaloid T16H medium borderline
OoffiChr07g01615.1 Alkaloid T16H medium borderline
OoffiChr08g00208.1 Alkaloid T16H medium borderline
OoffiChr08g00773.1 Alkaloid T16H medium borderline
OoffiChr08g01357.1 Alkaloid T16H medium borderline
OoffiChr09g00453.1 Alkaloid T16H medium borderline
OoffiChr09g00454.1 Alkaloid T16H medium borderline
OoffiChr09g00966.1 Alkaloid T16H medium borderline
OoffiChr09g00966.2 Alkaloid T16H medium borderline
OoffiChr10g01306.1 Alkaloid T16H medium borderline
OoffiChr11g00363.1 Alkaloid T16H medium borderline
OoffiChr11g00946.1 Alkaloid T16H medium borderline
OoffiChr12g00133.1 Alkaloid T16H medium borderline
OoffiChr12g01352.1 Alkaloid T16H medium borderline
OoffiChr01g00574.1 Alkaloid T3O medium pass
OoffiChr01g00575.1 Alkaloid T3O medium pass
OoffiChr01g00738.1 Alkaloid T3O medium pass
OoffiChr01g00739.1 Alkaloid T3O medium pass
OoffiChr01g00741.1 Alkaloid T3O low borderline
OoffiChr01g00860.1 Alkaloid T3O medium borderline
OoffiChr01g01496.1 Alkaloid T3O medium borderline
OoffiChr01g03380.1 Alkaloid T3O medium pass
OoffiChr01g03959.1 Alkaloid T3O low borderline
OoffiChr01g03999.2 Alkaloid T3O medium borderline
OoffiChr02g00070.1 Alkaloid T3O low borderline
OoffiChr02g00606.1 Alkaloid T3O medium borderline
OoffiChr02g00610.1 Alkaloid T3O medium pass
OoffiChr02g00611.1 Alkaloid T3O medium borderline
OoffiChr02g00613.1 Alkaloid T3O medium borderline
OoffiChr02g00614.1 Alkaloid T3O medium borderline
OoffiChr02g00615.1 Alkaloid T3O medium borderline
OoffiChr02g00616.1 Alkaloid T3O medium borderline
OoffiChr02g00621.1 Alkaloid T3O medium borderline
OoffiChr02g00623.1 Alkaloid T3O medium borderline
OoffiChr02g00876.1 Alkaloid T3O medium borderline
OoffiChr02g00877.1 Alkaloid T3O medium borderline
OoffiChr02g01493.1 Alkaloid T3O medium borderline
OoffiChr02g01559.1 Alkaloid T3O medium borderline
OoffiChr02g01565.2 Alkaloid T3O medium borderline
OoffiChr02g01565.3 Alkaloid T3O medium borderline
OoffiChr02g01566.1 Alkaloid T3O medium borderline
OoffiChr02g01676.1 Alkaloid T3O medium borderline